nysgrc.org
Useful Tools
http://www.nysgrc.org/psi3/tools.html
Disorder prediction : DISOPRED,. Sequence searches : BLAST,. Signal peptide prediction : PHOBIUS. Crystallizability prediction: Xtalpred,. Database of comparative protein structure models : ModBase. Comparative modeling web-server : ModWeb. Comparative Modelling using multiple templates : M4T. Multiple Mapping Method : MMM. Homology detection by HMM-HMM comparison : HHPRED. Protein Structure Prediction : mGenTHREADER. Integrated Construct Design Interface: ICDI. Protein Structure Prediction : PSIPRED.
blog.pansapiens.com
Running a local JABAWS server for Jalview on Ubuntu (11.04 Natty) | {Under reconstruction}{Under reconstruction}
http://blog.pansapiens.com/2011/10/14/running-a-local-jabaws-server-for-jalview-on-ubuntu-11-04-natty
The blog formerly known as Your bones got a little machine. Skip to primary content. Running a local JABAWS server for Jalview on Ubuntu (11.04 Natty). October 14, 2011. But maybe the Dundee server is down. Or maybe you think your local machine will do things faster. Or maybe you work on über secret sequences in some Faraday cage bunker with no permanent network connection. In each of these cases, you may want to run your own local JABAWS server and use that instead. In this case, read on. Now you need t...
compbio.dundee.ac.uk
The Barton Group | Bioinformatics Research | Division of Computational Biology | College of Life Sciences | University of Dundee
http://www.compbio.dundee.ac.uk/index.html
About the Barton Group. Videos from the Group. Photos of Barton Group Events. Archive of Group News 1999-2013. Archive of Group News May 1994-1999. Google Scholar (Date order). Google Scholar (Citation order). Geoff Barton on twitter. PDF's of early Geoff Barton papers. Data Analysis Group Publications. All Barton Group Software and Databases. Multiple Sequence Alignment and Analysis. Protein Structure and Prediction. Sequence Analysis Tools and Databases. Utility Programs and legacy Databases. Is the la...
compbio.dundee.ac.uk
Current Group Members | The Barton Group | Bioinformatics Research | Division of Computational Biology | University of Dundee
http://www.compbio.dundee.ac.uk/people.html
About the Barton Group. Videos from the Group. Photos of Barton Group Events. Archive of Group News 1999-2013. Archive of Group News May 1994-1999. Google Scholar (Date order). Google Scholar (Citation order). Geoff Barton on twitter. PDF's of early Geoff Barton papers. Data Analysis Group Publications. All Barton Group Software and Databases. Multiple Sequence Alignment and Analysis. Protein Structure and Prediction. Sequence Analysis Tools and Databases. Utility Programs and legacy Databases. In her fr...
compbio.dundee.ac.uk
Software and Databases | The Barton Group | Bioinformatics Research | Division of Computational Biology | University of Dundee
http://www.compbio.dundee.ac.uk/software.html
About the Barton Group. Videos from the Group. Photos of Barton Group Events. Archive of Group News 1999-2013. Archive of Group News May 1994-1999. Google Scholar (Date order). Google Scholar (Citation order). Geoff Barton on twitter. PDF's of early Geoff Barton papers. Data Analysis Group Publications. All Barton Group Software and Databases. Multiple Sequence Alignment and Analysis. Protein Structure and Prediction. Sequence Analysis Tools and Databases. Utility Programs and legacy Databases. Alscript ...
compbio.dundee.ac.uk
News 1999-2013 | The Barton Group | Bioinformatics Research | Division of Computational Biology | University of Dundee
http://www.compbio.dundee.ac.uk/oldnews.html
About the Barton Group. Videos from the Group. Photos of Barton Group Events. Archive of Group News 1999-2013. Archive of Group News May 1994-1999. Google Scholar (Date order). Google Scholar (Citation order). Geoff Barton on twitter. PDF's of early Geoff Barton papers. Data Analysis Group Publications. All Barton Group Software and Databases. Multiple Sequence Alignment and Analysis. Protein Structure and Prediction. Sequence Analysis Tools and Databases. Utility Programs and legacy Databases. Welcome t...
nanobioteh.net
Центр нанобиотехнологий
http://www.nanobioteh.net/poleznye-resursy
Москва, Пасечная ул., 4. Журналы и базы данны. National Center for Biotechnology Information. NCBI предоставляет информацию о базах данных белковых доменов, ДНК (GenBank) и РНК, базах данных статей научной литературы (PubMed) и таксономичной информации (TaxBrowser), обеспечивает поиск данных о конкретном биологическом виде (Taxonomy). Также содержит различные стандартные программы биоинформатики (BLAST). Вавиловский журнал генетики и селекции. Lab of Pat Heslop-Harrison and Trude Schwarzacher. Lab of Pat...
conbind.org
API Documentation | ConBind
http://www.conbind.org/api
The ConBind REST API provides bioinformaticians and other developers the means for integrating the ConBind service in their own applications. Using the ConBind REST API is possible to submit new alignments and retrieve completed alignments in various formats. You should be familiar with REST architecture before writing an integration. Every alignment in ConBind is produced by submitting an alignment task. Which allows retrieving the alignment. URI Structure and Methods. Http:/ api.conbind.org. Sending a ...
jalview-rnasupport.blogspot.com
GSOC 2010 - Adding RNA Support to Jalview: July 2010
http://jalview-rnasupport.blogspot.com/2010_07_01_archive.html
GSOC 2010 - Adding RNA Support to Jalview. Google Summer of Code 2010. Source Code Hosted by Google. This blog is about my work for the Google Summer of Code 2010. I am working with Jim Procter and Albert Vilella as my mentors to add RNA support to the multiple sequence alignment editor Jalview. Wrong about RALEE bug. Bug in RALEE code. What happens when you open a Stockholm File? Regular expressions in Jalview. Bug tracker, svn. Monday, July 26, 2010. Wrong about RALEE bug. Tuesday, July 13, 2010. I cam...
jalview-rnasupport.blogspot.com
GSOC 2010 - Adding RNA Support to Jalview: Fetching sequences from Rfam
http://jalview-rnasupport.blogspot.com/2010/08/fetching-sequences-from-rfam.html
GSOC 2010 - Adding RNA Support to Jalview. Google Summer of Code 2010. Source Code Hosted by Google. This blog is about my work for the Google Summer of Code 2010. I am working with Jim Procter and Albert Vilella as my mentors to add RNA support to the multiple sequence alignment editor Jalview. Demonstration of GSoC Project. Fetching sequences from Rfam. Random colors for covariation color scheme. MAFFT - multiple sequence alignment. Monday, August 9, 2010. Fetching sequences from Rfam. Id': followed by...
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