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opera.autosome.ru

autosome.ru Opera House: bioinformatics tools on the web

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Welcome to the bioinformatics ‘Opera House’ opera.autosome.ru. A web access to sequence motif analysis tools developed by the autosome.ru. Are available for motif comparison and regulatory SNV analysis. Are available for motif discovery in nucleotide sequences. You may also visit HOCOMOCO. Database of transcription factor binding models (motifs) for human and mouse TFs and EpiFactors. Database of epigenetic regulators.

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autosome.ru Opera House: bioinformatics tools on the web | opera.autosome.ru Reviews
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HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Welcome to the bioinformatics ‘Opera House’ opera.autosome.ru. A web access to sequence motif analysis tools developed by the autosome.ru. Are available for motif comparison and regulatory SNV analysis. Are available for motif discovery in nucleotide sequences. You may also visit HOCOMOCO. Database of transcription factor binding models (motifs) for human and mouse TFs and EpiFactors. Database of epigenetic regulators.
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1 macro ape
2 compare two motifs
3 find similar motif
4 perfectos ape
5 rsnp tfbs annotation
6 chipmunk
7 motif discovery
8 dinucleotide motif discovery
9 databases
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macro ape,compare two motifs,find similar motif,perfectos ape,rsnp tfbs annotation,chipmunk,motif discovery,dinucleotide motif discovery,databases,contacts,ticket number,team,and perfectos ape,and dichipmunk
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autosome.ru Opera House: bioinformatics tools on the web | opera.autosome.ru Reviews

https://opera.autosome.ru

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Welcome to the bioinformatics ‘Opera House’ opera.autosome.ru. A web access to sequence motif analysis tools developed by the autosome.ru. Are available for motif comparison and regulatory SNV analysis. Are available for motif discovery in nucleotide sequences. You may also visit HOCOMOCO. Database of transcription factor binding models (motifs) for human and mouse TFs and EpiFactors. Database of epigenetic regulators.

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opera.autosome.ru opera.autosome.ru
1

autosome.ru Opera House: bioinformatics tools on the web

http://opera.autosome.ru/macroape/scan/new

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Toy examples for the PCM. Motif 1 1234 93 1037 1258 264 5 3348 5 76 7 3530 9 58 18 3521 25 518 1547 22 1535 138 9 3457 18 115 82 1862 1563 228 43 3279 72 110 134 3163 215 239 2226 402 755. None: exact word counts. Minimal similarity to recalculate in precise mode:. Scan a collection for TFBS models (motifs) similar to a given query. Click a field in the form on the left to get a hint.

2

autosome.ru Opera House: bioinformatics tools on the web

http://opera.autosome.ru/perfectosape/scan/new

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Paste a list of sequences with SNPs in a textarea or select a file with sequences to scan. SNPs with flanking sequences (at least 25 nucleotides from each side):. Or load a file with SNP-sequences:. Find TFBS motifs binding alleles of a single-nucleotide variant with different affinity. Click a field in the form on the left to get a hint. Supported by RFBR grants 15-34-20423 and 16-34-01318.

3

autosome.ru Opera House: bioinformatics tools on the web

http://opera.autosome.ru/macroape/compare/new

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Toy examples for the PCM-to-PCM. Motif 1 1234 93 1037 1258 264 5 3348 5 76 7 3530 9 58 18 3521 25 518 1547 22 1535 138 9 3457 18 115 82 1862 1563 228 43 3279 72 110 134 3163 215 239 2226 402 755. None: exact word counts. Effective sample size (model 1):. Effective sample size (model 2):. Evaluate Jaccard similarity between two TFBS models (motifs). Click a field in the form on the left to get a hint.

4

autosome.ru Opera House: bioinformatics tools on the web

http://opera.autosome.ru/perfectosape/description

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. PERFECTOS-APE: PrEdicting Regulatory Functional Effect by Approximate P-value Estimation. Software predicts possible regulatory role of single nucleotide variants (SNVs) or polymorphisms (SNPs). The main idea is that SNVs may be located directly within transcription factor binding sites and different SNV alleles can change binding affinity. Allows testing SNVs against several publically available TFBS models: HOCOMOCO-10.

5

autosome.ru Opera House: bioinformatics tools on the web

http://opera.autosome.ru/macroape/description

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. MACRO-APE: MAtrix CompaRisOn by Approximate P-value Estimation. Software allows efficient comparison of transcription factor binding models (often called motifs) represented as position weight matrices (PWMs, also known as Position Specific Scoring Matrices, PSSMs) with score thresholds. Online interface is available here. Standalone command-line version (requires Java 1.6) is available for download ( binary.

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autosome.ru Opera House: bioinformatics tools on the web

HOCOMOCO collection of TFBS motifs. EpiFactors database for epigenetic regulators. Welcome to the bioinformatics ‘Opera House’ opera.autosome.ru. A web access to sequence motif analysis tools developed by the autosome.ru. Are available for motif comparison and regulatory SNV analysis. Are available for motif discovery in nucleotide sequences. You may also visit HOCOMOCO. Database of transcription factor binding models (motifs) for human and mouse TFs and EpiFactors. Database of epigenetic regulators.

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