interPopula: a Python API to access the HapMap Project dataset
It also supports access to gene annotation information from both UCSC Genome Browser and Ensembl. Gene annotation information is useful to process HapMap data. It is a set of scripts demonstrating the integration of the databases above with existing tools (and other databases) relevant to population genetics. It is a set of guidelines to deal with inconsistencies across databases. InterPopula is available for download. T Antao, BMC Bioinformatics. An introductory user guide. We also have a Q&A forum.
Mcheza - Selection workbench for dominant markers
Mcheza provides an integrated platform to test dominant markers for selection. The application merges the DFDIST kernel, a widely used Fst-outlier method to detect selection with an intelligent, easy to use interface, some of the features are:. Support for multitest correction based on false discovery rates (FDR). Multitest correction is fundamental to avoid high overestimation of the percentage of outliers. Java Web Start application with an easy to use interface, directly usable from the web. Generatio...