shattuck.bmap.ucla.edu

Shattuck Research Group

Ahmanson-Lovelace Brain Mapping Center. David Geffen School of Medicine. University of California, Los Angeles. 635 Charles Young Drive South, Suite 225. Los Angeles, CA 90095-7334. Welcome to the website for David Shattuck. S research group at the Ahmanson-Lovelace Brain Mapping Center. We are focused on the development of novel algorithms for processing magnetic resonance imaging data and the application of these algorithms to the study of the human brain. Ahmanson-Lovelace Brain Mapping Center.

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Shattuck Research Group | shattuck.bmap.ucla.edu Reviews

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Ahmanson-Lovelace Brain Mapping Center. David Geffen School of Medicine. University of California, Los Angeles. 635 Charles Young Drive South, Suite 225. Los Angeles, CA 90095-7334. Welcome to the website for David Shattuck. S research group at the Ahmanson-Lovelace Brain Mapping Center. We are focused on the development of novel algorithms for processing magnetic resonance imaging data and the application of these algorithms to the study of the human brain. Ahmanson-Lovelace Brain Mapping Center.

<META> KEYWORDS

1 group

2 research interests

3 cortical surface modeling

4 diffusion imaging

5 segmentation

6 validation

7 visualization

8 publications

9 all peer reviewed

10 journal

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group,research interests,cortical surface modeling,diffusion imaging,segmentation,validation,visualization,publications,all peer reviewed,journal,conference,abstracts,h index,google scholar profile,pubmed external link,software,brainsuite,shiva,resources

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Shattuck Research Group | shattuck.bmap.ucla.edu Reviews

https://shattuck.bmap.ucla.edu

Ahmanson-Lovelace Brain Mapping Center. David Geffen School of Medicine. University of California, Los Angeles. 635 Charles Young Drive South, Suite 225. Los Angeles, CA 90095-7334. Welcome to the website for David Shattuck. S research group at the Ahmanson-Lovelace Brain Mapping Center. We are focused on the development of novel algorithms for processing magnetic resonance imaging data and the application of these algorithms to the study of the human brain. Ahmanson-Lovelace Brain Mapping Center.

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shattuck.bmap.ucla.edu

1

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/all

Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW.

2

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/hindex

Journal publications contributing to my h-index, as computed from ISI Web of Knowledge (January 2016). Ie, 24 of my publications have been cited at least 24 times each). Cited by 480] Shattuck DW. Sandor-Leahy SR, Schaper KA, Rottenberg DA, and Leahy RM, "Magnetic Resonance Image Tissue Classification Using a Partial Volume Model," NeuroImage. Vol 13, No. 5, May 2001, pp. 856-876. Cited by 287] Shattuck DW. Cited by 272] Shattuck DW. 2004 Jun 4;304(5676):1509-13. Cited by 108] Shattuck DW. And Leahy RM (...

3

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/abstracts

Joshi AA, Choi S, Shattuck DW, Leahy RM (2016) SVReg: Surface-Constrained Volumetric Registration in BrainSuite 22nd Annual Meeting of the Organization for Human Brain Mapping. Geneva, Switzerland, June 2016. Philips OR, Joshi SH, Narr KL, Shattuck DW, Singh M, Ploner C, Pruess H, Paul F, Di Paola M, Finke C (2016) Returning to Normalcy: The Superficial White matter in Anti-NMDA Receptor Encephalitis, 22nd Annual Meeting of the Organization for Human Brain Mapping. Geneva, Switzerland, June 2016. Hamburg...

4

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/journal

Wang ZI, Krishnan B, Shattuck DW, Leahy RM, Moosa ANV, Wyllie E, Burgess RC, Al-Sharif NB, Joshi AA, Alexopoulos AV, Mosher JC, Udayasankar U, the Pediatric Imaging Neurocognition and Genetics Study, Jones SE (in press) Automated MRI Volumetric Analysis in Epilepsy Patients with Rasmussen's Syndrome, accepted to American Journal of Neuroradiology. Phillips O, Joshi S, Squitieri F, Sanchez-Castaneda C, Narr K, Shattuck D. Wei M, Joshi AA, Zhang M, Meid L, Manis FR, He Q, Beattie RL, Xue G, Shattuck DW.

5

Shattuck Research Group

http://shattuck.bmap.ucla.edu/publications/conference

Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW (accepted) "Correcting inhomogeneity-induced distortion in FMRI using non-rigid registration", IEEE International Symposium on Biomedicine (ISBI'15). Brooklyn, New York, April 2015. Joshi AA, Ashrafulla S, Shattuck DW. Damasio H, Leahy RM (2013) Cortical Shape Analysis using the Anisotropic Global Point Signature, MFCA 2013: 4th MICCAI workshop on Mathematical Foundations of Computational Anatomy. Nagoya, Japan, September 2013. Barcelona, May 2012.

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brainsuite.org

BrainSuite | Tutorials: Cortical Surface Extraction Sequence

http://brainsuite.org/tutorials/cseexcercise

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Tutorials: Cortical Surface Extraction Sequence. Download the file for this tutorial here. More information on the complete dataset is available online here. Run Full Co...

brainsuite.org

BrainSuite | Demonstration Videos

http://brainsuite.org/demonstration-videos

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Extraction, Registration, and Labeling. Diffusion and Connectivity Visualization Tools. UCLA Brain Mapping Center.

brainsuite.org

BrainSuite | Quick Start: Register and Label a Brain

http://brainsuite.org/quickstart/svreg

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Quick Start: Register and Label a Brain. More detailed information about SVReg can be found in the Processing. Running SVReg from the BrainSuite GUI. New BrainSuite Stat...

brainsuite.org

BrainSuite | CSE: Output Files

http://brainsuite.org/processing/surfaceextraction/output-files

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. In the following,. Is the MRI file’s prefix (e.g. “brainsuite subj1 m6” for the file “brainsuite subj1 m6.nii.gz”). Mask of entire brain (cerebrum cerebellum brainstem).

brainsuite.org

BrainSuite | Frequently Asked Questions

http://brainsuite.org/faq

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. What are the supported (input) file formats? What are system requirements for BDP? See “System Requirements” section in BDP technical details. See BDP technical details.

brainsuite.org

BrainSuite | Extraction, Registration, and Labeling

http://brainsuite.org/demonstration-videos/workflow

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Extraction, Registration, and Labeling. UCLA Brain Mapping Center. BrainSuite at the 2016 UCLA NITP Advanced Neuroimaging Summer Program.

brainsuite.org

BrainSuite | Tutorials: Diffusion Imaging Exercises

http://brainsuite.org/tutorials/dtiexercise

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. Tutorials: Diffusion Imaging Exercises. If you’ve run through the previous guided exercises, then you only need the diffusion-weighted image,. Type the following into th...

brainsuite.org

BrainSuite | Quick Start

http://brainsuite.org/quickstart

Magnetic resonance image analysis tools. Register and Label a Brain. Cortical Surface Extraction Sequence. Extraction, Registration, and Labeling. Diffusion MRI and Connectivity Visualization Tools. SVReg Binaries and Modules. Running BrainSuite in nipype. Nipype example: cortical surface extraction. DFS : surface file. DFC : curve file. This guide provides a few tips on getting started with BrainSuite. Guided tutorials are provided on the Tutorials. Cortical Surface Extraction Sequence (CSE).

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Ahmanson-Lovelace Brain Mapping Center. David Geffen School of Medicine. University of California, Los Angeles. 635 Charles Young Drive South, Suite 225. Los Angeles, CA 90095-7334. Welcome to the website for David Shattuck. S research group at the Ahmanson-Lovelace Brain Mapping Center. We are focused on the development of novel algorithms for processing magnetic resonance imaging data and the application of these algorithms to the study of the human brain. Ahmanson-Lovelace Brain Mapping Center.

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