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ATTED-II: Home

Last update: 2018.01.29. UniProtKB AC/ID (NAC1 ARATH). New ATTED-II publication available. Obayashi et al. (2018) "ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of Statistical Property of the Mutual Rank Index". ( Publication. Version 9.0] New coexpression data are available for 16 data sets of 9 species. Most of the tools are workable for the all species. Raquo; Tutorial Movies. Eg [ gene page. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list.

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Last update: 2018.01.29. UniProtKB AC/ID (NAC1 ARATH). New ATTED-II publication available. Obayashi et al. (2018) ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of Statistical Property of the Mutual Rank Index. ( Publication. Version 9.0] New coexpression data are available for 16 data sets of 9 species. Most of the tools are workable for the all species. Raquo; Tutorial Movies. Eg [ gene page. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list.

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2 keyword chlorophyll

3 gene alias myb2

4 149 edgeannotation

5 draw

6 149 networkdrawer

7 browse

8 bulk download

9 what's new

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ATTED-II: Home | atted.jp Reviews

https://atted.jp

Last update: 2018.01.29. UniProtKB AC/ID (NAC1 ARATH). New ATTED-II publication available. Obayashi et al. (2018) "ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of Statistical Property of the Mutual Rank Index". ( Publication. Version 9.0] New coexpression data are available for 16 data sets of 9 species. Most of the tools are workable for the all species. Raquo; Tutorial Movies. Eg [ gene page. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list.

INTERNAL PAGES

atted.jp

1

Browse | ATTED-II

http://atted.jp/top_browsing.shtml

UniProtKB AC/ID (NAC1 ARATH). Coexpressed gene network for subcellular locations. ATTED-II uses the 304 cis elements of heptamer that are selected by CEG method. [ more. Types of pages (version 5.2). Gene network for a GO. Gene network for an organelle. Gene list for a GO. Gene list for KEGG, AraCyc, KaPPA.

2

Statistics | ATTED-II

http://atted.jp/top_statistics.shtml

UniProtKB AC/ID (NAC1 ARATH). Last update; Oct. 25. 2015. Statistics for Coexpression data in ATTED-II. Coexpression data in ATTED-II ver. 8.0. Species relationships on taxonomy:. Coexpression data in ATTED-II ver. 7.0. Condition-Specific Coexpression data for Arabidopsis.

3

License | ATTED-II

http://atted.jp/license.shtml

UniProtKB AC/ID (NAC1 ARATH). Contents on ATTED-II are licensed under a Creative Commons Attribution 2.1 License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Downloadable data, results of tools, figures and web snapshots can be used for publication, presentation and any other purposes. In such cases, to avoid misunderstanding, we ask you to add version number of ATTED-II or each coexpression data.

4

Overview | ATTED-II

http://atted.jp/overview.shtml

UniProtKB AC/ID (NAC1 ARATH). DNA microarray analysis produces information on relative expression levels for thousands of genes simultaneously. In addition, large collections of microarray data contain information about concerted changes in transcript levels in these datasets beyond the original purpose of each dataset. In the case of the right example, the two genes relatively strongly coexpress. The degree of coexpression is measured by pearson's correlation r = 0.7. For Arabidopsis Srinivasasainagendr...

5

History of data versions | statistics | ATTED-II

http://atted.jp/versions.shtml

UniProtKB AC/ID (NAC1 ARATH). Last update; Aug. 17. 2013. History of data version. ATTED-II ( Arabidopsis thaliana. Trans-factor and cis-element prediction database). ATTED ( Arabidopsis thaliana. TAIR: Sequences: blast datasets. ATTED-II ( Arabidopsis thaliana. Trans-factor and cis-element prediction database). ATTED ( Arabidopsis thaliana.

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arabidopsis.med.ohio-state.edu

:: AGRIS Links::

http://arabidopsis.med.ohio-state.edu/links.html

Arabidopsis Information Portal (AIP). The Arabidopsis Information Resource (TAIR) provides a comprehensive resource for the scientific community working with Arabidopsis thaliana, a widely used model plant. TIGR's Genome Projects are a collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans. The mission of the ABRC is to acquire, preserve and distribute seed and DNA resources that are useful to...

coxpresdb.jp

Overview | COXPRESdb

http://coxpresdb.jp/overview.shtml

Entrez Gene ID (1717). DNA microarray analysis produces information on relative expression levels for thousands of genes simultaneously. In addition, large collections of microarray data contain information about concerted changes in transcript levels in these datasets beyond the original purpose of each dataset. In the case of the right example, the two genes relatively strongly coexpress. The degree of coexpression is measured by pearson's correlation r = 0.7. Example of coexpression) Protein complex.

araport.org

External Resources | Araport

https://www.araport.org/community/links

Skip to main content. Follow Araport on Twitter. Like Araport on Facebook. A collection of useful sites containing information and resources pertaining to. Home page for sequencing 1001 Arabidopsis genomes. Arabidopsis Biological Resource Center. Arabidopsis Gene Regulatory Information Server (includes transcription factors, promoters and TF-promoter interactions). A curated knowledgebase of plant biological pathways. Arabidopsis component of the Plant Metabolic Pathway Databases. Browse pri-miRNA expres...

hgc.jp

Databases | Human Genome Center

http://hgc.jp/english/database.html

JSNP database is a collection of approximately 200,000 gene-based SNP information that includes their location, methods to genotype them, their allele frequencies in Japanese general population. This project was one of the Prime Minister's National Millennium Projects in Japan, with the collaboration of Human Genome Center (HGC), Institute of Medical Science (IMS), The University of Tokyo, and Japan Science and Technology Agency (JST). Database of transcription factors and promoters of Bacillus subtilis.

biosozai.kane-tsugu.com

研究・学会用　パワーポイント素材

http://biosozai.kane-tsugu.com/indexsozailink.html

BAR(The Bio-Array Resource for Plant Biology). Laboratory ARA MASA のLab Note.

omicspace.riken.jp

PosMed User's Guide

http://omicspace.riken.jp/PosMed/Help

Tutorial 1: How to search candidate genes in positional-cloning studies. Tutorial 2: How to find disease-related genes and bioresources NEW! Tutorial 3: How to find Arabidopsis Bioresources and an Application for NGS analysis NEW! Search "diabetes" related mouse bioresource of RIKEN Bio Resource Center. Search "diabetes" related mouse genes on chromosomal 1. Search mouse genes existing in the region of chromosome 2 1-90M. Or chromosome 4 100M-150M from a keyword "diabetes". Check the list of genes. Gene ...

polyploidy.biosci.utexas.edu

The Chen Laboratory

http://polyploidy.biosci.utexas.edu//links.php

Skip to main navigation. Skip to first column. Skip to second column. Circadian Rrhythms and Heterosis. Polyploidy and Hybrid Incompatibility. Polyploidy and Small RNAs. The Arabidopsis Information Resource ( TAIR. A database of genetic and molecular molecular biology data for the model higher plant. Genomes (A Catalog of. DOE Joint Genome Institute ( JGI. Genomic expression database (Arabidopsis Transcriptome Genomic Express Database). Munich Information Center for Protein Sequences ( MIPS.

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ATTED-II: Home

Last update: 2018.01.29. UniProtKB AC/ID (NAC1 ARATH). New ATTED-II publication available. Obayashi et al. (2018) "ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of Statistical Property of the Mutual Rank Index". ( Publication. Version 9.0] New coexpression data are available for 16 data sets of 9 species. Most of the tools are workable for the all species. Raquo; Tutorial Movies. Eg [ gene page. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list. Eg [ gene list.

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