bacdb.org

BacWGSTdb: Bacterial Whole Genome Sequence Typing Database

Generate SNP by genome. Choose refgenome by ST. Is designed for monitoring the emergence and outbreak of important bacterial pathogens. In detail, it serves two particular purposes: Typing and Tracking. For users who have sequenced genome of their query isolates, please visit Tools page. For users who investigate using the metadata in BacWGSTdb only, please visit Browse page. Dr Ye Feng, E-mail: pandafengye@gmail.com. Dr Zhi Ruan, E-mail: ruanzhi1986@163.com.

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BacWGSTdb: Bacterial Whole Genome Sequence Typing Database | bacdb.org Reviews

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Generate SNP by genome. Choose refgenome by ST. Is designed for monitoring the emergence and outbreak of important bacterial pathogens. In detail, it serves two particular purposes: Typing and Tracking. For users who have sequenced genome of their query isolates, please visit Tools page. For users who investigate using the metadata in BacWGSTdb only, please visit Browse page. Dr Ye Feng, E-mail: pandafengye@gmail.com. Dr Zhi Ruan, E-mail: ruanzhi1986@163.com.

<META> KEYWORDS

1 browse

2 tools

3 typing and tracking

4 coordinate conversion

5 snp annotation

6 submission

7 links

8 faqs

9 bacwgstdb

10 database structure

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browse,tools,typing and tracking,coordinate conversion,snp annotation,submission,links,faqs,bacwgstdb,database structure,database workflow,report bugs

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BacWGSTdb: Bacterial Whole Genome Sequence Typing Database | bacdb.org Reviews

https://bacdb.org

Generate SNP by genome. Choose refgenome by ST. Is designed for monitoring the emergence and outbreak of important bacterial pathogens. In detail, it serves two particular purposes: Typing and Tracking. For users who have sequenced genome of their query isolates, please visit Tools page. For users who investigate using the metadata in BacWGSTdb only, please visit Browse page. Dr Ye Feng, E-mail: pandafengye@gmail.com. Dr Zhi Ruan, E-mail: ruanzhi1986@163.com.

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bacdb.org

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BacWGSTdb tools: Typing & Tracking

http://bacdb.org/BacWGSTdb/ST_identification/ST_identification.htm

Generate SNP by genome. Choose refgenome by ST. Note that no MLST scheme is available for. Since the three species have single-clone population structure. If you want to generate SNP data for their isolates, please choose the MLST Scheme as "Not required". Please select a species. Please choose a MLST scheme. Upload your genome sequence. Browsers with 1024 x 768 resolution recommended. This website works well with IE, Firefox, Chrome and Safari.

2

BacWGSTdb tools: Genome SNPs finding

http://bacdb.org/BacWGSTdb/SNP_finding/snp_finding.htm

Generate SNP by genome. Choose refgenome by ST. Generate SNP by genome. This tool generates SNP data between the query genome and the user-specified reference genome. Please select a species. Please choose a reference genome. Upload your own reference genome. Upload your query genome sequence. Browsers with 1024 x 768 resolution recommended. This website works well with IE, Firefox, Chrome and Safari. 2010-2014, Institute for Translational Medicine, Zhejiang University, China.

3

BacWGSTdb tools: Coordinate_conversion

http://bacdb.org/BacWGSTdb/Coordinate_conversion/genome_coordinate_conversion.html

Generate SNP by genome. Choose refgenome by ST. This tool makes the coordinate conversion when users don’t generate the SNP data by the recommend reference genome at the very beginning and yet they are willing to submit the SNP data into this database. Please select a species. Choose the first reference genome. Please choose a reference genome. Upload your first reference genome. Choose the second reference genome. Please choose a reference genome. Upload your second reference genome.

4

BacWGSTdb: Tools

http://bacdb.org/BacWGSTdb/tools/BacWGSTdb%20Tools.htm

Generate SNP by genome. Choose refgenome by ST. Generate SNP by genome. Different from Determine-ST-by-genome, this tool generates SNP data between the query genome and the user-specified reference genome. Choose refgenome by ST. The SNP data must be generated using the specified reference genome if they are going to be deposited in this database. This tool tells users which reference genome they should use based on the input ST number.

5

BacWGSTdb tools: SNP annotation

http://bacdb.org/BacWGSTdb/SNPannotation/SNPannotation.htm

Generate SNP by genome. Choose refgenome by ST. This tool judges each of the SNPs uploaded by user whether it is synonymous, non synonymous, or intergenic. Please select a species. Please choose a reference genome. Upload your SNP file. Browsers with 1024 x 768 resolution recommended. This website works well with IE, Firefox, Chrome and Safari. 2010-2014, Institute for Translational Medicine, Zhejiang University, China.

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BacWGSTdb: Bacterial Whole Genome Sequence Typing Database

Generate SNP by genome. Choose refgenome by ST. Is designed for monitoring the emergence and outbreak of important bacterial pathogens. In detail, it serves two particular purposes: Typing and Tracking. For users who have sequenced genome of their query isolates, please visit Tools page. For users who investigate using the metadata in BacWGSTdb only, please visit Browse page. Dr Ye Feng, E-mail: pandafengye@gmail.com. Dr Zhi Ruan, E-mail: ruanzhi1986@163.com.

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