barkai-serv.weizmann.ac.il

Naama Barkai Lab

Design principles of biological circuits. Cells are constantly "making decisions" - monitoring their environment, modulating their metabolism and 'deciding' whether to divide, differentiate or die. For this, they use biochemical circuits composed of interacting genes and proteins. Advances over the past decades have mapped many of these circuits. Still, can we infer the underlying logic from the detailed circuit structure? Can we deduce the selection forces that shaped these circuits during evolution?

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Naama Barkai Lab | barkai-serv.weizmann.ac.il Reviews

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Design principles of biological circuits. Cells are constantly making decisions - monitoring their environment, modulating their metabolism and 'deciding' whether to divide, differentiate or die. For this, they use biochemical circuits composed of interacting genes and proteins. Advances over the past decades have mapped many of these circuits. Still, can we infer the underlying logic from the detailed circuit structure? Can we deduce the selection forces that shaped these circuits during evolution?

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8 naamabarkai@weizmann ac il

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Naama Barkai Lab | barkai-serv.weizmann.ac.il Reviews

https://barkai-serv.weizmann.ac.il

Design principles of biological circuits. Cells are constantly "making decisions" - monitoring their environment, modulating their metabolism and 'deciding' whether to divide, differentiate or die. For this, they use biochemical circuits composed of interacting genes and proteins. Advances over the past decades have mapped many of these circuits. Still, can we infer the underlying logic from the detailed circuit structure? Can we deduce the selection forces that shaped these circuits during evolution?

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barkai-serv.weizmann.ac.il

1

Naama Barkai Lab

https://barkai-serv.weizmann.ac.il/software.htm

Some of the links below require authentication. Please contact us. Modular structures of transcription programs:. Explanations of the interface. Sequence and expression comparison between several organisms. Regulatory sequence testing and pathway analysis. Online implementation (S. cerevisiae). Iterative Signature Algorithm (ISA). Analysis of large-scale gene expression data. Regulatory sequence testing and pathway analysis. Standalone programs (Windows PC, S. cerevisiae). Matlab GUI: S. cerevisiae.

2

Naama Barkai Lab

https://barkai-serv.weizmann.ac.il/links.htm

Berkeley Drosophila Genome Project (BDGP). The Arabidopsis Information Resource (TAIR). National Center for Biotechnology Information (NCBI).

3

Naama Barkai Lab

https://barkai-serv.weizmann.ac.il/group.htm

Pictures from: Neve Tzedek trip. Research Associate, Eran Segal's Lab, Weizmann Institute Of Science. Research Fellow in Genetics, Harvard Medical School. PhD at Ziv Reich's Lab, Weizmann Institute Of Science. Postdoc, Jan Skotheim's lab,Stanford School Of Medicince. PI at Max Planck Institute. PI at Tel Aviv University. Administrative Manager of R& D, Futuragene. Molecular Biology Researcher, Evogene. Postdoc, Douglas Melton and SharadRamanathan lab, Harvard University. PI at Ben Gurion University.

4

Naama Barkai Lab

https://barkai-serv.weizmann.ac.il/index.htm

Design principles of biological circuits. Cells are constantly "making decisions" - monitoring their environment, modulating their metabolism and 'deciding' whether to divide, differentiate or die. For this, they use biochemical circuits composed of interacting genes and proteins. Advances over the past decades have mapped many of these circuits. Still, can we infer the underlying logic from the detailed circuit structure? Can we deduce the selection forces that shaped these circuits during evolution?

5

Naama Barkai Lab

https://barkai-serv.weizmann.ac.il/papers.htm

RSS of the lab's publications. Chromatin dynamics during DNA replication. Raz Bar-Ziv*, Yoav Voichek* and Naama Barkai. Expression homeostasis during DNA replication. Yoav Voichek*, Raz Bar-Ziv* and Naama Barkai. Research Highlight in Nature Reviews Molecular Cell Biology (2016). A WntD-Dependent Integral Feedback Loop Attenuates Variability in Drosophila Toll Signaling. Neta Rahimi*, Inna Averbukh*, Michal Haskel-Ittah*, Neta Degani*, Eyal D. Schejter, Naama Barkai, Ben-Zion Shilo. Biomass growth: impli...

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An odyssey to paradise | Lorenz Adlung

https://lorenzadlung.wordpress.com/2016/12/13/an-odyssey-to-paradise

An odyssey to paradise. You are running late in the middle of the night with an important validation experiment and an incubator is breaking down when you learn that your passport is expired. The plan was to fly to Israel the next day. That was how my trip to the Weizmann Institute of Science. As I was lucky being offered an EIPOD fellowship. I had to arrange my visit to Israel on rather short notice if I wanted to make a reasonable decision between the two options for my PostDoc: EMBL. This is a short n...

2016.the-embo-meeting.org

Concurrent sessions

http://2016.the-embo-meeting.org/programme/concurrent-sessions.html

The road to Open Science. EMBO Gold Medal lectures. The quest for evidence: an insider’s view on science and policy in Europe. Selective publication and the replicability crisis. Targeting to the endoplasmic reticulum tail-anchored proteins and beyond. ADP-ribosylation in signalling events. Pursuing an academic career. Machines in the organism and disease. New technologies to study molecular machines. Structure of large molecular machines. Molecular architecture of cellular systems. Lukas C. Kapitein.

2016.the-embo-meeting.org

Speakers

http://2016.the-embo-meeting.org/speakers.html

The road to Open Science. EMBO Gold Medal lectures. The quest for evidence: an insider’s view on science and policy in Europe. Selective publication and the replicability crisis. Targeting to the endoplasmic reticulum tail-anchored proteins and beyond. ADP-ribosylation in signalling events. Pursuing an academic career. Ronald N. Germain. Alfred L. Goldberg. Lukas C. Kapitein. Charles H. Langley. Jan Marco Müller BE. VAT Reg. No.: DE264471047.

the-embo-meeting.org

Concurrent sessions

http://www.the-embo-meeting.org/programme/concurrent-sessions

The road to Open Science. EMBO Gold Medal lectures. The quest for evidence: an insider’s view on science and policy in Europe. Selective publication and the replicability crisis. Targeting to the endoplasmic reticulum tail-anchored proteins and beyond. ADP-ribosylation in signalling events. Pursuing an academic career. Machines in the organism and disease. New technologies to study molecular machines. Structure of large molecular machines. Molecular architecture of cellular systems. Lukas C. Kapitein.

the-embo-meeting.org

Speakers

http://www.the-embo-meeting.org/speakers

The road to Open Science. EMBO Gold Medal lectures. The quest for evidence: an insider’s view on science and policy in Europe. Selective publication and the replicability crisis. Targeting to the endoplasmic reticulum tail-anchored proteins and beyond. ADP-ribosylation in signalling events. Pursuing an academic career. Ronald N. Germain. Alfred L. Goldberg. Lukas C. Kapitein. Charles H. Langley. Jan Marco Müller BE. VAT Reg. No.: DE264471047.

thereberlab.com

News - thereberlab

http://www.thereberlab.com/home/news

06/01/2016 - Off to Woods Hole - Yeah! Moving to The Marine Biological Laboratory in Woods Hole for the summer. From June - August our address is. Rowe 308 ,. 05/18/2016 - Systems Biology lecture series Imaging Biological Systems". Simone is invited to talk about "Using optics to measure subcellular dynamics and mechanics" at the at the BIMSB. Joint Master Thesis in the labs of Helge Ewers and Simone Reber. Imaging the Neuronal Microtubule Cytoskeleton. Thanks to the group of Michalis Averof. 03/14/2016 ...

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barkai-serv.weizmann.ac.il

Naama Barkai Lab

Design principles of biological circuits. Cells are constantly "making decisions" - monitoring their environment, modulating their metabolism and 'deciding' whether to divide, differentiate or die. For this, they use biochemical circuits composed of interacting genes and proteins. Advances over the past decades have mapped many of these circuits. Still, can we infer the underlying logic from the detailed circuit structure? Can we deduce the selection forces that shaped these circuits during evolution?

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