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Laboratory of Theory of Biopolymers | Andrzej Kolinski's Research Group

Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Join our workshops on "Modeling of protein flexibility and protein-peptide interactions using CABS-flex and CABS-dock standalone applications". Workshops will be held:. Middot;··. Middot;··. Middot;··. Scientific Reports, 6:37532, 2016.

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Laboratory of Theory of Biopolymers | Andrzej Kolinski's Research Group | biocomp.chem.uw.edu.pl Reviews

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Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Join our workshops on Modeling of protein flexibility and protein-peptide interactions using CABS-flex and CABS-dock standalone applications. Workshops will be held:. Middot;··. Middot;··. Middot;··. Scientific Reports, 6:37532, 2016.

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Laboratory of Theory of Biopolymers | Andrzej Kolinski's Research Group | biocomp.chem.uw.edu.pl Reviews

https://biocomp.chem.uw.edu.pl

Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Join our workshops on "Modeling of protein flexibility and protein-peptide interactions using CABS-flex and CABS-dock standalone applications". Workshops will be held:. Middot;··. Middot;··. Middot;··. Scientific Reports, 6:37532, 2016.

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biocomp.chem.uw.edu.pl

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CABS-dock: server for protein-peptide docking

http://biocomp.chem.uw.edu.pl/CABSdock

Server for flexible protein-peptide docking. Given a protein receptor structure and a peptide sequence, CABS-dock performs docking search for the binding site allowing for full flexibility of the peptide and small fluctuations of the receptor backbone. Papers describing the CABS-dock server and its example applications:. CABS-dock web server for flexible docking of peptides to proteins without prior knowledge of the binding site. Nucleic Acids Res, 43(W1): W419-W424. 10.1093/nar/gkv456, 2015.

2

Publications of this author | Laboratory of Theory of Biopolymers

http://biocomp.chem.uw.edu.pl/publications/82

Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Addas, K M. Andrews, Benjamin T. Arakaki, Adrian K. Baskunov, Vladimir B. Bogdanova, Ekaterina S. Brooks, Charles L. Bujnicki, Janusz M. Capraro, Dominique T. Chuartzman, S.G. Co, Nguyen Truong. DeLuca, Hector F. Dominy, Brian N.

3

CABS-flex: server for fast simulation of protein structure fluctuations

http://biocomp.chem.uw.edu.pl/CABSflex

Server for fast simulation of protein structure fluctuations. CABS-flex is an efficient procedure for the simulation of structure flexibility of folded globular proteins. Using an input protein structure the CABS-flex outputs:. A set of protein models (reflecting the flexibility of the input structure, in all-atom PDB format) ready to use in structure-based studies of protein functions and interactions,. Residue fluctuation profiles and other accompanying analysis. Learn more ». See example ».

4

ClusCo | Laboratory of Theory of Biopolymers

http://biocomp.chem.uw.edu.pl/tools/clusco

Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. A software for GPU/CPU clustering and comparison of protein models. Http:/ biocomp.chem.uw.edu.pl/clusco/. BMC Bioinformatics 2013, 14:62 doi:10.1186/1471-2105-14-62.

5

Multipole-2 and “Biomolecules and Nanostructures 5” conferences | Laboratory of Theory of Biopolymers

http://biocomp.chem.uw.edu.pl/multipole-2-and-biomolecules-and-nanostructures-5-conferences

Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Addas, K M. Andrews, Benjamin T. Arakaki, Adrian K. Baskunov, Vladimir B. Bogdanova, Ekaterina S. Brooks, Charles L. Bujnicki, Janusz M. Capraro, Dominique T. Chuartzman, S.G. Co, Nguyen Truong. DeLuca, Hector F. Dominy, Brian N.

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Jan Cz. Dobrowolski. Joanna E. Rode. Michał H. Jamróz. Piotr F.J. Lipiński. Institute of Nuclear Chemistry and Technology. Laboratory of intermolecular interactions, Department of Chemistry, Warsaw University. Institute of Physical Chemistry Polish Academy of Sciences. Raman Imaging Group and JCET, Faculty of Chemistry Jagiellonian University. Polish Chemical Society Warsaw Division. Interdisciplinary Centre for Mathematical and Computational Modelling,Warsaw. Laboratory of Theory of Biopolymers.

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Laboratory of Theory of Biopolymers | Andrzej Kolinski's Research Group

Skip to main content. Andrzej Kolinski Research Group. Read our new review on coarse-grained modeling. Modeling Software and Servers. Try the CABSdock for protein-peptide docking. Try the CABS-flex for modeling of protein flexibility. Biomolecules dynamics and interactions. Join our workshops on "Modeling of protein flexibility and protein-peptide interactions using CABS-flex and CABS-dock standalone applications". Workshops will be held:. Middot;··. Middot;··. Middot;··. Scientific Reports, 6:37532, 2016.

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