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bioinformaticszen.com

Bioinformatics Zen

Software development, the happy path, and confirmation bias. An audio discussion of microbial sequencing. The economics of PacBio sequencing a microbe. Continuous, reproducible genome assembler benchmarking. Bioinformatics software is a disgrace to our field. Video: building robust Python programs using unit-tests. Trimming 454 reads at the 5' end may improve fidelity. Filtering inaccurate NGS reads using machine learning. What's the point of publishing? Poster: Predicting genotype from phenotype. Being ...

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Bioinformatics Zen | bioinformaticszen.com Reviews
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Software development, the happy path, and confirmation bias. An audio discussion of microbial sequencing. The economics of PacBio sequencing a microbe. Continuous, reproducible genome assembler benchmarking. Bioinformatics software is a disgrace to our field. Video: building robust Python programs using unit-tests. Trimming 454 reads at the 5' end may improve fidelity. Filtering inaccurate NGS reads using machine learning. What's the point of publishing? Poster: Predicting genotype from phenotype. Being ...
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Bioinformatics Zen | bioinformaticszen.com Reviews

https://bioinformaticszen.com

Software development, the happy path, and confirmation bias. An audio discussion of microbial sequencing. The economics of PacBio sequencing a microbe. Continuous, reproducible genome assembler benchmarking. Bioinformatics software is a disgrace to our field. Video: building robust Python programs using unit-tests. Trimming 454 reads at the 5' end may improve fidelity. Filtering inaccurate NGS reads using machine learning. What's the point of publishing? Poster: Predicting genotype from phenotype. Being ...

INTERNAL PAGES

bioinformaticszen.com bioinformaticszen.com
1

Bioinformatics Zen - Nurturing your talent in academia

http://www.bioinformaticszen.com/post/nurturing-your-talent-in-academia

Nurturing your talent in academia. Published Tue October 30 2007. Last week, I was at a VITAE school. In Brighton. These schools, specifically aimed at PhD students, teach the skills missing from postgraduate study, such as team-working, negotiation, communication, and marketing. This might sound a but woolly, but if you are a PhD student in the UK, I really recommend going to one. Consultancy is an avenue to explore. Everybody has a skill or knowledge that someone else is interested in hearin...A more c...

2

Bioinformatics Zen - Continuous, reproducible genome assembler benchmarking

http://www.bioinformaticszen.com/post/reproducible-assembler-benchmarks

Continuous, reproducible genome assembler benchmarking. Published Thu July 17 2014. New bioinformatics software is always being produced and published. The stream of new developments makes it difficult to keep track of the available software for common bioinformatics tasks. An example of this is the domain of genome assembly where there is already a large amount of existing software. Even if you know which is the best genome assembler for your data, another question is how easy is it to install? Aimed to...

3

Bioinformatics Zen - Video: building robust Python programs using unit-tests

http://www.bioinformaticszen.com/post/unit-testing-in-python

Video: building robust Python programs using unit-tests. Published Tue January 21 2014. I presented this video at the Joint Genome Institute as part of a drive to increase unit testing with the goal of improved software reliability. . Follow me on twitter @bioinformatics.

4

Bioinformatics Zen - Why write good software

http://www.bioinformaticszen.com/post/why-write-good-software

Why write good software. Published Tue February 3 2009. Bioinformatics is far from commercial software development. A bioinformatician's goal is developing novel scientific research or tools. A software developer is judged on delivering software that people will pay to use. A biologist, whether they use Perl, a pipette or both, is evaluated on their publication record. X000A; automated building. The situation in bioinformatics is different; a hypothesis is made, implemented, and tested. There ...Either e...

5

Bioinformatics Zen - Bioinformatics software is a disgrace to our field.

http://www.bioinformaticszen.com/post/bioinformatics-software-is-a-disgrace

Bioinformatics software is a disgrace to our field. Published Thu April 3 2014. Every piece of software written for publication, which then can't be found after publication is grant funding thrown away. Every piece of software that only worked for the author during manuscript preparation is grant money thrown away. Every piece of software reinvented solely for the purpose of adding a new feature and publishing is grant money thrown away. Follow me on twitter @bioinformatics.

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suicyte.wordpress.com suicyte.wordpress.com

Eugene Koonin direct | Suicyte Notes

https://suicyte.wordpress.com/2008/12/23/eugene-koonin-direct

Random thoughts on apoptosis, bioinformatics, connections …. Posted by: Kay at Suicyte. December 23, 2008. I have just read the blog post by Derek Lowe ‘ Publishing your work the Easy Way. 8216;, which covers the case of M.S. El Naschie, who is Editor-in-Chief of the journal Chaos, Solitons and Fractals. And apparently uses this position to publish tons of his own papers in that journal. Nature has also covered this case before. For some scientific details. Another reason for my somewhat careless attitud...

onebiglab.blogspot.com onebiglab.blogspot.com

One Big Lab: Off to ISMB 2008

http://onebiglab.blogspot.com/2008/07/off-to-ismb-2008.html

One small world = One Big Lab. Exploring the potential behind open science, open access, and open exchange of more than just ideas. Wednesday, July 16, 2008. Off to ISMB 2008. Tomorrow I'll be heading off to ISMB. No more poster tubes, little sheets of paper, curled edges, or push pins - just upload your file before you get on the plane, bring a thumb drive just in case, and you're good to go. Sure, they'd be expensive, delicate, heavy, and perhaps prone to glitches, but nothing a few years of tech i...

onebiglab.blogspot.com onebiglab.blogspot.com

One Big Lab: April 2008

http://onebiglab.blogspot.com/2008_04_01_archive.html

One small world = One Big Lab. Exploring the potential behind open science, open access, and open exchange of more than just ideas. Friday, April 18, 2008. Call for collaboration: calcium site predictions in need of validation. Time to walk the walk? If you or anyone you know is interested in collaborating with her to validate some of her predictions experimentally, please shoot me an email or respond here. Suggestions welcome, too! Monday, April 14, 2008. Emboldened by the collective fervor, I would lik...

dennogumi.org dennogumi.org

dennogumi.org

https://www.dennogumi.org/page/2

Linux · kde. Danbooru Client 0.5.0 released. A new version of Danbooru Client is now available! Tip: opening and closing ports needed by a systemd service. Recently I’ve been testing out murmur, http:/ wiki.mumble.info/wiki/Main Page. Server component, on my CentOS 7 server. Murmur requires specific ports being open to operate, and when using it I would open them manually, and close them after the session had been completed. General · linux · kde. The Big Forum Cleaning. Danbooru Client 0.4.0. Content li...

bioisit.blogspot.com bioisit.blogspot.com

bio.info.m@tics: May 2008

http://bioisit.blogspot.com/2008_05_01_archive.html

Tuesday, May 27, 2008. Is nano material really safe? I am sure you have heard of lots of interesting and promising nanotechnology products - shirt that repels water; minute particles that detect cancer cells or deliver drug to the cancer cells and not harming the surrounding normal cells. I too, believe that this field will be 'big'. However I can't help but feeling rather 'insecure' with the 'super small particle'. Is it really safe to human being? Would it one day 'back-fire' us? My del.icio.us.

bioisit.blogspot.com bioisit.blogspot.com

bio.info.m@tics: February 2008

http://bioisit.blogspot.com/2008_02_01_archive.html

Thursday, February 21, 2008. Just read about this possibility of having a virtual human. I always thought this will be the ultimate goal of systems biology. However I have reservation on the actual use of the 'tool'. I sincerely hope it will be for the betterment of the human beings. Monday, February 18, 2008. Biofuel. a friend or foe? Finally. a central place for researchers to annotate and share protein information. I just read about the article in Feb 2008. To be useful and updated.

synthesis.williamgunn.org synthesis.williamgunn.org

Uncategorized | Synthesis - An open science and social technology blog by William GunnSynthesis

http://synthesis.williamgunn.org/category/uncategorized

A synthesis of ideas about open science and social technology. On Google Ads are SO much better than Doubleclick! Http:/ www.oweninsuragency.com/. On HIV Vaccine affects hispanics and african americans differently from others. Http:/ www.tna1.info/. On Connotea, you’ve been good to me. Http:/ www.oweninsuragency.com/. On Science Blogging Benefits Everyone. On HIV Vaccine affects hispanics and african americans differently from others. Cities make people unhappy. I’ve come a long way. Which makes the poin...

synthesis.williamgunn.org synthesis.williamgunn.org

career | Synthesis - An open science and social technology blog by William GunnSynthesis

http://synthesis.williamgunn.org/tag/career

A synthesis of ideas about open science and social technology. On Google Ads are SO much better than Doubleclick! Http:/ www.oweninsuragency.com/. On HIV Vaccine affects hispanics and african americans differently from others. Http:/ www.tna1.info/. On Connotea, you’ve been good to me. Http:/ www.oweninsuragency.com/. On Science Blogging Benefits Everyone. On HIV Vaccine affects hispanics and african americans differently from others. Cities make people unhappy. I’ve come a long way. There are three para...

synthesis.williamgunn.org synthesis.williamgunn.org

I’ve come a long way. | Synthesis - An open science and social technology blog by William GunnSynthesis

http://synthesis.williamgunn.org/2013/04/09/ive-come-a-long-way

A synthesis of ideas about open science and social technology. On Google Ads are SO much better than Doubleclick! Http:/ www.oweninsuragency.com/. On HIV Vaccine affects hispanics and african americans differently from others. Http:/ www.tna1.info/. On Connotea, you’ve been good to me. Http:/ www.oweninsuragency.com/. On Science Blogging Benefits Everyone. On HIV Vaccine affects hispanics and african americans differently from others. Cities make people unhappy. I’ve come a long way. That arose which I t...

synthesis.williamgunn.org synthesis.williamgunn.org

23andme and decode me are personal genetic profiling servicesfor assessing your genetic history and genetic disease risk profile | Synthesis - An open science and social technology blog by William GunnSynthesis

http://synthesis.williamgunn.org/2008/05/06/theres-very-good-agreement-among-23andme-and-decodeme-genetic-profiles/comment-page-1

A synthesis of ideas about open science and social technology. On Google Ads are SO much better than Doubleclick! Http:/ www.oweninsuragency.com/. On HIV Vaccine affects hispanics and african americans differently from others. Http:/ www.tna1.info/. On Connotea, you’ve been good to me. Http:/ www.oweninsuragency.com/. On Science Blogging Benefits Everyone. On HIV Vaccine affects hispanics and african americans differently from others. Cities make people unhappy. I’ve come a long way. Has a nice summary.

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Bioinformaticsweb.co.nr:Open Access Bioinformatics Education Resource

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UMP-MGRC BIOINFORMATICS WORKSHOP 2009

UMP-MGRC BIOINFORMATICS WORKSHOP 2009. Monday, October 5, 2009. Click on the image the view larger image. Posted by Bioinformatics Workshop. Monday, October 05, 2009. Date : 14th October 2009. Time: 8.30 am to 5.00 pm. Place : Dewan Kuliah Utama 1 (DKU 1), Blok W, Universiti Malaysia Pahang. Posted by Bioinformatics Workshop. Monday, October 05, 2009. The idea of organizing the. UMP- MGRC BIOINFORMATICS WORKSHOP. Was brought up by the students of BCI. 3043 (INTRODUCTION TO BIOINFORMATICS). This workshop ...

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ほけんの窓口って生命保険はいいの?

An an 美STORY などの有名雑誌にも掲載されていますから、愛用者が増えるんでしょうね。

bioinformaticszen.com bioinformaticszen.com

Bioinformatics Zen

Software development, the happy path, and confirmation bias. An audio discussion of microbial sequencing. The economics of PacBio sequencing a microbe. Continuous, reproducible genome assembler benchmarking. Bioinformatics software is a disgrace to our field. Video: building robust Python programs using unit-tests. Trimming 454 reads at the 5' end may improve fidelity. Filtering inaccurate NGS reads using machine learning. What's the point of publishing? Poster: Predicting genotype from phenotype. Being ...

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