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Lab of Stephen A. Smith at UMich

Lab of Stephen A. Smith at UMich. Jan 14, 2018. A couple new papers: plant tree of life and quartet sampling. A couple of our papers just came out in the Tree of Life special edition of AJB. Pease et al. Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life. Looks at different ways to examine support in a phylogeny using a bunch of green plant examples. Smith and Brown. Constructing a broadly inclusive seed plant phylogeny. Dec 14, 2017. Sep 20, 2017.

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Lab of Stephen A. Smith at UMich | blackrim.org Reviews

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Lab of Stephen A. Smith at UMich. Jan 14, 2018. A couple new papers: plant tree of life and quartet sampling. A couple of our papers just came out in the Tree of Life special edition of AJB. Pease et al. Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life. Looks at different ways to examine support in a phylogeny using a bunch of green plant examples. Smith and Brown. Constructing a broadly inclusive seed plant phylogeny. Dec 14, 2017. Sep 20, 2017.

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2 people

3 projects

4 publications

5 resources

6 software

7 lab updates

8 congrats

9 blackrim

10 evoblackrim

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Lab of Stephen A. Smith at UMich | blackrim.org Reviews

https://blackrim.org

Lab of Stephen A. Smith at UMich. Jan 14, 2018. A couple new papers: plant tree of life and quartet sampling. A couple of our papers just came out in the Tree of Life special edition of AJB. Pease et al. Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life. Looks at different ways to examine support in a phylogeny using a bunch of green plant examples. Smith and Brown. Constructing a broadly inclusive seed plant phylogeny. Dec 14, 2017. Sep 20, 2017.

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pdg.blackrim.org

Phylogenetic Discussion Group: UMich | PDG

Phylogenetic Discussion Group: UMich. For 10/24/14 process from geography? October 23, 2014. This is the paper for friday:. Mistaking geography for biology: inferring processes from species distributions. For 10/17/14: Stacey Smith and pigment evolution. October 16, 2014. Here is the paper for Friday the 17th COMPETITION FOR HUMMINGBIRD POLLINATION SHAPES FLOWER COLOR VARIATION IN ANDEAN SOLANACEAE. For 10/10/14: More finches. October 9, 2014. For 10/3/14: Sisyphus and speciation. October 8, 2014. For 9/...

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blackrim.org

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Projects – Lab of Stephen A. Smith

http://blackrim.org/projects

Lab of Stephen A. Smith. The research in the lab covers a wide range of topics from large dataset and large phylogenetic analyses, rates of evoluti0n, plant macroevolution, and transcriptomics. A brief description for some of the major research projects is provided below. Open Tree of Life. S A Smith,. J Brown, and C. Hinchliff. 2013. Analyzing and Synthesizing Phylogenies Using Tree Alignment Graphs. PLoS Computational Biology. link. Soltis, D. E., S. A. Smith. N Cellinese, et al. 2011. Smith, S. A.

2

May 2015 – Lab of Stephen A. Smith

http://blackrim.org/2015/05

Lab of Stephen A. Smith. The lab (and others) went to Magee Marsh for a lab fieldtrip to see the migration. Here is a picture. Here is the list from Joseph Brown in the lab, including 56 species in total, and 19 warblers. Although of the latter, 3 were by ear only, and 4 others were singletons I got on the walk out):. Postdocs getting jobs in the lab! Open Tree paper published in PNAS. New paper examining gene trees in phylogenomic datasets published in BMC Evol Bio.

3

new graduate student – Lab of Stephen A. Smith

http://blackrim.org/new-graduate-student

Lab of Stephen A. Smith. Caroline Parins-Fukuchi has decided to join the lab as a graduate student! Phylogenomics and Caryophyllales in MBE. Postdocs getting jobs in the lab! Open Tree paper published in PNAS. New paper examining gene trees in phylogenomic datasets published in BMC Evol Bio. Postdocs getting jobs in the lab! Open Tree paper published in PNAS. New paper examining gene trees in phylogenomic datasets published in BMC Evol Bio.

4

frontpage – Lab of Stephen A. Smith

http://blackrim.org/category/frontpage

Lab of Stephen A. Smith. Post-doctoral position to work on ongoing projects including phylogenetics,. Phylogenomics, and evolution. In particular, there are projects involving. Work with the Open Tree of Life, phylogenetic dataset construction, large. Phylogenetic analyses, phylogenomic analyses involving genomes and. Transcriptomes, orthology and homology searching, analysis of differential. Gene expression using phylogenies, large comparative analysis, and. Work and computer programming. And is the gen...

5

Publications – Lab of Stephen A. Smith

http://blackrim.org/publications

Lab of Stephen A. Smith. Lab members in bold. Smith, S.A.*. 2016 Heterogeneous molecular processes among the causes of how sequence similarity scores can fail to recapitulate phylogeny. Briefings in Bioinformatics link. O’Meara, B. C., S. D. Smith, W. S. Armbruster, L. D. Harder, C. R. Hardy, L. C. Hileman, Larry Hufford, Amy Litt, Susana Magallón, S. A. Smith. Proc Roy Soc B. Smith, S. A. M Moore, J. W. Brown. Brockington S.F.*, Y. Yang. Molecular Biology and Evolution. J F Allman, J. W. Brown. And A St...

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biosync.fieldmuseum.org

Topic “Science” | The EOL Biodiversity Synthesis Group

http://biosync.fieldmuseum.org/news/science

The EOL Biodiversity Synthesis Group. Ree Seminar on Pedicularis. October 5, 2012. Assistant Director of BioSynC, Rick Ree, traveled to the University of Tennessee from September 27-29 to give an invited seminar in the Department of Ecology and Evolutionary Biology. On his research in the flowering plant genus Pedicularis. Lousewort and wood betony). New Intern in BioSynC. June 21, 2012. Rick Ree Speaks at Smithsonian Botanical Symposium. April 26, 2012. Chicago Plant Science Symposium. April 26, 2012.

visionlab.web.unc.edu

People | Plants, Evolution, Genetics, Computation

http://visionlab.web.unc.edu/people

Plants, Evolution, Genetics, Computation. Todd Vision Laboratory Biology UNC Chapel Hill. Plants, Evolution, Genetics, Computation. Associate Professor, Department Biology. Adjunct Associate Professor, School of Information and Library Sciences. Office: Genome Sciences 3155; Email: tjv@bio.unc.edu; Phone: 919.962.4479. Software developer 2007-2015), Research Triangle Institute. Postdoc 2005-2007), Illumina. María Isabel Chacón Sanchez. Postdoc 2002-2004), Universidad Nacional de Colombia. California Stat...

opentree.wikispaces.com

Open Tree of Life - People

http://opentree.wikispaces.com/People

Skip to main content. Get your brand new Wikispaces Classroom now. And do "back to school" in style. Open Tree of Life. Open Tree of Life is a collaborative project among 11 PIs at 10 institutions. Field Museum of Natural History. National Evolutionary Synthesis Center. Phyloinformatics, phylogenetic methods, data sharing, software development. Jonathan Rees, software architect. Elliot Hauser, UNC SILS student. Jessica Grant, Research Associate: Taxonomy, pre-OTToL, phylogenomics, LGT.

treetapper-dev.blogspot.com

TreeTapper-Dev: Using large trees is surprisingly difficult

http://treetapper-dev.blogspot.com/2008/10/using-large-trees-is-surprisingly.html

A blog describing the development of the TreeTapper.org website. Friday, October 17, 2008. Using large trees is surprisingly difficult. There has been a lot of effort and interest in phylogenetics in getting big trees (1000 taxa). This should be the most difficult problem in phylogenetics - after all, finding the best tree is generally (under most optimization criteria) NP-hard. The relevance to TreeTapper is how and whether to record information about how programs perform with large trees. The first...

lamiaceae.myspecies.info

Resources | Diversification, Evolution, and Historical Biogeography of Lamiaceae

http://lamiaceae.myspecies.info/content/resources

Skip to main content. Log in using OpenID. Log in using OpenID. Diversification, Evolution, and Historical Biogeography of Lamiaceae. University of Nebraska-Kearney (UNK). University of Florida (UF). Florida Museum of Natural History (UF). Department of Biology (UF). Laboratory of Molecular Systematics and Evolutionary Genetics (UF). University of Michigan (UM). Department of Ecology and Evolutionary Biology (UM). Lab of Stephen A. Smith (UM). The Plant List: Lamiaceae. Gateway to African Lamiaceae.

bgsa.biology.ufl.edu

Graduate Student Invited Speaker – Biology Graduate Student Association

http://bgsa.biology.ufl.edu/bgsa-activities/graduate-invited-speaker

Skip to main content. Awards & Grants. Graduate Student Invited Speaker. Undergraduate Research Assistantship Program (URAP). Description of officer positions. Organizing lunch for visiting faculty. College of Liberal Arts and Sciences. Graduate Student Invited Speaker. Graduate Student Invited Speaker. Undergraduate Research Assistantship Program (URAP). Graduate Student Invited Speaker. There are no upcoming events at this time. Nomination and voting will occur the spring semester prior to the. The fir...

biopython.org

Active projects · Biopython

http://biopython.org/wiki/Active_projects

Biopython version 1.67. Edit this page on GitHub. This page provides a central location to collect references to active projects. This is a good place to start if you are interested in contributing to Biopython and want to find larger projects in progress. For developers, use this to reference git. Branches or other projects which you will be working on for an extended period of time. Please keep it up to date as projects are finished and integrated into Biopython. And the code is on a GitHub branch.

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Lab of Stephen A. Smith at UMich

Lab of Stephen A. Smith at UMich. Jan 14, 2018. A couple new papers: plant tree of life and quartet sampling. A couple of our papers just came out in the Tree of Life special edition of AJB. Pease et al. Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life. Looks at different ways to examine support in a phylogeny using a bunch of green plant examples. Smith and Brown. Constructing a broadly inclusive seed plant phylogeny. Dec 14, 2017. Sep 20, 2017.

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