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First: PrinciplesRamblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong?
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Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong?
http://blog.benfulton.net/
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First: Principles | blog.benfulton.net Reviews
https://blog.benfulton.net
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong?
blog.benfulton.net
First: Principles: 07/01/2012 - 08/01/2012
http://blog.benfulton.net/2012_07_01_benfulton_archive.html
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong? Tuesday, July 03, 2012. Links to this post. Subscribe to: Posts (Atom). Subscribe in a reader. Enter your email address:. Picture Window template. Powered by Blogger.
First: Principles: 03/01/2013 - 04/01/2013
http://blog.benfulton.net/2013_03_01_benfulton_archive.html
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong? Saturday, March 23, 2013. Analyzing DNA with BWA. I discussed a million-dollar challenge posted by Innocenture. The challenge is to analyze a series of DNA reads and determine the source. My professor suggested using a program named BWA. Bwa align AAGCTCTA human genome. And it does its magic and returns the location in the genome of the best several matches. Of course, you...
First: Principles: Trinity RNA-Seq
http://blog.benfulton.net/2014/07/trinity-rna-seq.html
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong? Wednesday, July 16, 2014. In January a site went live called readingroom.info. The paper is Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data. This is what I sent them:. The reconstruction of a transcriptome. From the short reads generated by RNA-Seq. A major data structure used the pipeline is the de Bruijn graph. Subscribe in a reader.
First: Principles: Fitnesse and Slim
http://blog.benfulton.net/2014/07/fitnesse-and-slim.html
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong? Sunday, July 06, 2014. Several applications were created to support the protocol in various languages, including RubySlim for Ruby and WaferSlim for Python. I had occasion to write a set of integration tests recently, so I thought it would be simple to set up a Slim server to get the tests running. Turned out, I was wrong. Define TEST SYSTEM {slim}. Ruby module of fixtures.
First: Principles: Suffix Arrays
http://blog.benfulton.net/2013/06/suffix-arrays.html
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong? Sunday, June 02, 2013. In our quest to win a million dollars. We're trying to Index the Human Genome. Sheep By a stream. I won't go into the details of how to create such an index right now, but it can be done in relatively few lines of code. (One easy-to-use library is called SAIS. I wrote an article on suffix array algorithms. Part I: A Million Dollars Up For Grabs.
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Ben Fogel
Software Development and IT Administration. Page 1 of 2. Older Posts →. Allowing a DbContext to accept a connection string. Most DbContext classes created using entity follow this pattern public partial class SomeEntities : DbContext { public SomeEntities() :base("name=preDecidedConnectionString") } I go ahead and extend each entity I work with in ». Dealing with Passwords in a Python git repository. C# Inheritance and constructors. Mixing AngularJS with jQuery based libraries. WindowsUpdateCLI is a com...
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Ben Freundorfer's Blog. Jekyll on App Engine with beautiful URLs. For my project Waterglass. I host a static Jekyll. Blog on Google App Engine. And of course I want beautiful URLs like /blog/8-cat-pics-that-made-me-smile. 8211; but that’s not as automatic on App Engine as on other servers. So here is how you do it. Jekyll can build your blog having nice URLs. File to fake them. Faking index documents on Google App Engine. Finally tells App Engine which files to upload to the server – in our example...
First: Principles
Ramblings of a software developer with a degree in bioinformatics. Agile development mixed with DNA sequencing - what could go wrong? Monday, August 10, 2015. How Installing a Random Tool Caused Ruby on Rails to Stop Working. At work I maintain a little Ruby on Rails site. Not a particularly interesting site, just a set of pages of statistics gathered from various databases around the organization. It runs on a RHEL6 virtual machine and I write most of the code on my Windows laptop using RubyMine. See ht...
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Florida Bengal Cat Breeder. Skip to primary content. Skip to secondary content. Why You Should Own a Bengal. March 17, 2015. Bengal cats can be a great addition to any family but, are they right for your family and why should you own one? Being playful is the first thing you will notice about a Bengal. They are not the cat that will lie around all day and hide from your guests. You will appreciate how social they are with your guests and how much they want to be the center of attention. They are also hea...
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