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Chad Burrus's Blog

Chad Burrus's Blog. On Splitting Files…. Edit (2012/03/10): Updated the awk script to use “$0” instead of “$1” to prevent problems with spaces in FASTQ identifiers. Hat tip to Thasso via his comment below. Note: this is an older post I’ve had sitting around for a while–hope it helps someone. In bioinformatics, we often have to deal with huge FASTQ. The Illumina file into pieces, we could pull the reads we wanted out in parallel, and thus would get our results much faster than just waiting on the serial s...

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Chad Burrus's Blog. On Splitting Files…. Edit (2012/03/10): Updated the awk script to use “$0” instead of “$1” to prevent problems with spaces in FASTQ identifiers. Hat tip to Thasso via his comment below. Note: this is an older post I’ve had sitting around for a while–hope it helps someone. In bioinformatics, we often have to deal with huge FASTQ. The Illumina file into pieces, we could pull the reads we wanted out in parallel, and thus would get our results much faster than just waiting on the serial s...

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Chad Burrus's Blog | chburrus.wordpress.com Reviews

https://chburrus.wordpress.com

Chad Burrus's Blog. On Splitting Files…. Edit (2012/03/10): Updated the awk script to use “$0” instead of “$1” to prevent problems with spaces in FASTQ identifiers. Hat tip to Thasso via his comment below. Note: this is an older post I’ve had sitting around for a while–hope it helps someone. In bioinformatics, we often have to deal with huge FASTQ. The Illumina file into pieces, we could pull the reads we wanted out in parallel, and thus would get our results much faster than just waiting on the serial s...

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chburrus.wordpress.com

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On Splitting Files… | Chad Burrus's Blog

https://chburrus.wordpress.com/2011/09/11/on-splitting-files

Chad Burrus's Blog. On Splitting Files…. Edit (2012/03/10): Updated the awk script to use “$0” instead of “$1” to prevent problems with spaces in FASTQ identifiers. Hat tip to Thasso via his comment below. Note: this is an older post I’ve had sitting around for a while–hope it helps someone. In bioinformatics, we often have to deal with huge FASTQ. The Illumina file into pieces, we could pull the reads we wanted out in parallel, and thus would get our results much faster than just waiting on the serial s...

2

Strange Loop 2010: Thursday | Chad Burrus's Blog

https://chburrus.wordpress.com/2010/10/17/strange-loop-2010-thursday

Chad Burrus's Blog. Strange Loop 2010: Thursday. Last week, I spent Thursday and Friday at the Strange Loop. Conference in St. Louis, Missouri. It turned out to be a pretty great conference, even if I missed out on a lot of interesting talks due to a school project I had to finish and a lot of time spent volunteering. The ones I did make it to were amazing, however. (You can access the slides for each of the talks at the Strange Loop presentations page. I started off with Hilary Mason. Better known as Ge...

3

Mathematical glossary | Chad Burrus's Blog

https://chburrus.wordpress.com/mathematical-glossary

Chad Burrus's Blog. Eigenvalue – (no formal definition from either place except for in mathematical symbols I can’t copy) the amount by which an eigenvector changes when multiplied by its associated matrix. So, formally, if I have a square matrix. Is an eigenvalue if:. Formally known as an eigenvalue),. Is an eigenvector if:. Vector space – a mathematical structure formed by a collection of vectors with an single point of origin. An example would be normal Euclidean space. ( Wikipedia. Moment – a q...

4

Chad Burrus | Chad Burrus's Blog

https://chburrus.wordpress.com/author/chburrus

Chad Burrus's Blog. Author Archives: Chad Burrus. On Splitting Files…. Edit (2012/03/10): Updated the awk script to use “$0” instead of “$1” to prevent problems with spaces in FASTQ identifiers. Hat tip to Thasso via his comment below. Note: this is an older post I’ve had sitting around for a while–hope it helps someone. In bioinformatics, we often have to deal with huge FASTQ. The Illumina file into pieces, we could pull the reads we wanted out in parallel, and thus would get our results much faster tha...

5

Résumé | Chad Burrus's Blog

https://chburrus.wordpress.com/resume

Chad Burrus's Blog. This page represents my résumé on the web. You can download a PDF. Version if you like. Research Assistant, School of Informatics and Computing, Indiana University, Bloomington, Indiana. Jan. 2010 – present. Studying the principles of metagenomics. Developing methods to compare metagenomic samples. Writing Python and C code to analyze the differences in metagenomic samples. Developer Intern, Sentry Data Systems, Deerfield Beach, Florida. May 2010-Aug. 2010. Developer/Architect, LAT, I...

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Chad Burrus's Blog

Chad Burrus's Blog. On Splitting Files…. Edit (2012/03/10): Updated the awk script to use “$0” instead of “$1” to prevent problems with spaces in FASTQ identifiers. Hat tip to Thasso via his comment below. Note: this is an older post I’ve had sitting around for a while–hope it helps someone. In bioinformatics, we often have to deal with huge FASTQ. The Illumina file into pieces, we could pull the reads we wanted out in parallel, and thus would get our results much faster than just waiting on the serial s...

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