cloudgene.uibk.ac.at

Cloudgene

Install the first Application. The philosophy behind Cloudgene is to hide the complexity of MapReduce programs from end users and provide them a graphical workflow environment to work with. Cloudgene is a platform designed for Hadoop MapReduce. It provides a graphical user interface for the complete MapReduce workflow including data transfer, workflow execution and data export. It provides feedback at any point. Checkout our current cooperations to see Cloudgene in Action:. This server provides a free ge...

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Install the first Application. The philosophy behind Cloudgene is to hide the complexity of MapReduce programs from end users and provide them a graphical workflow environment to work with. Cloudgene is a platform designed for Hadoop MapReduce. It provides a graphical user interface for the complete MapReduce workflow including data transfer, workflow execution and data export. It provides feedback at any point. Checkout our current cooperations to see Cloudgene in Action:. This server provides a free ge...

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Cloudgene | cloudgene.uibk.ac.at Reviews

https://cloudgene.uibk.ac.at

Install the first Application. The philosophy behind Cloudgene is to hide the complexity of MapReduce programs from end users and provide them a graphical workflow environment to work with. Cloudgene is a platform designed for Hadoop MapReduce. It provides a graphical user interface for the complete MapReduce workflow including data transfer, workflow execution and data export. It provides feedback at any point. Checkout our current cooperations to see Cloudgene in Action:. This server provides a free ge...

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haplogrep.uibk.ac.at

mtDNA-KnowledgeBase | Analyzing the human mitochondrial genome

http://haplogrep.uibk.ac.at/blog

HaploGrep2 Update 2.1.0. August 10, 2016. August 10, 2016. We just updated HaploGrep2, with the following minor points:. The Export of the Extended Report (Export / Haplogroup Extendet (txt) got extended with the “Found Polys” – see Describtion below:. The Report for the potential Phantom Mutations got corrected, so that positions with bases according the rCRS reference are not listed anymore. Report of the possible Recombinations based now on Hamming Distance instead of Kulczynksi-Distance. 8211; Varian...

seppinho.github.io

Cloudgene, a Hadoop-As-A-Service approach – Sebs Blog

http://seppinho.github.io/cloudgene/hadoop/2015/08/27/cloudgene

Cloudgene, a Hadoop-As-A-Service approach. Already some years ago. My colleague Lukas Forer. Hadoop jar hadoop-examples.jar wordcount input output. To abstract this command we developed Cloudgene. Consisting of (a) a workflow system (including the workflow definition language WDL. Http:/ hadoop.apache.org/. Cloudgene simplified our lives a lot in the last years, and two very recent services based on Cloudgene show the success of our platform: The first service is the mtDNA-Server. Follow me on Twitter.

smallchangebio.wordpress.com

Notes: Bioinformatics Open Source Conference 2015 day 1 morning — Holly Bik and Data Science | Small Change Bioinformatics

https://smallchangebio.wordpress.com/2015/07/10/bosc2015day1a

Notes: Bioinformatics Open Source Conference 2014 day 2: Philip Bourne, Software Interoperability, Open Science. Notes: Bioinformatics Open Source Conference 2015 day 1 afternoon — Standards, Interoperability and Diversity Panel →. July 10, 2015. Notes: Bioinformatics Open Source Conference 2015 day 1 morning — Holly Bik and Data Science. I’m at the 2015 Bioinformatics Open Source Conference (BOSC). Holly Bik – Bioinformatics: Still a scary world for biologists. In September of 2010. She then describ...

seppinho.github.io

Projects – Sebs Blog

http://seppinho.github.io/projects

These are the main projects I’m currently working on:. A workflow system for Hadoop. Imputation Service based on minimac3. And Cloudgene. A cooperation with the Center of Statistical Genetics. MtDNA haplogroup classification using Phylotree. A cooperation with the Databases and Information Systems Group. At the University of Innsbruck. A NGS heteroplasmy and contamination pipeline based on Cloudgene. Including a parallelized version of BWA MEM. And in the German Chronic Kidney Disease Study GCKD.

haplogrep.uibk.ac.at

NGS, HaploGrep and Hadoop MapReduce | mtDNA-KnowledgeBase

http://haplogrep.uibk.ac.at/blog/ngs-haplogrep-and-hadoop-mapreduce

NGS, HaploGrep and Hadoop MapReduce. NGS, HaploGrep and Hadoop MapReduce. December 16, 2014. December 17, 2014. Many of our HaploGrep users are interested in analysing data within automated pipelines. To support users with a scalable and standardized service, we are happy to present you our newest project, called mtDNA-Server. MtDNA-Server provides a free service for the complete workflow of NGS mtDNA projects. It includes the alignment of FASTQ SE/PE data based on BWA MEM (using JBWA. Sebastian has writ...

forer.it

Software – Lukas Forer – Researcher and Software Developer

http://www.forer.it/projects

Researcher and Software Developer. Visit me on Github. Cloudgene is a freely available platform to improve the usability of MapReduce programs by providing a graphical user interface for the execution, the import and export of data and the reproducibility of workflows on in-house (private clouds) and rented clusters (public clouds). Http:/ cloudgene.uibk.ac.at. Https:/ imputationserver.sph.umich.edu. Http:/ mtdna-server.uibk.ac.at. Askimed is a software product to collect clinical study or register data ...

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cloudgene.uibk.ac.at

Cloudgene

Install the first Application. The philosophy behind Cloudgene is to hide the complexity of MapReduce programs from end users and provide them a graphical workflow environment to work with. Cloudgene is a platform designed for Hadoop MapReduce. It provides a graphical user interface for the complete MapReduce workflow including data transfer, workflow execution and data export. It provides feedback at any point. Checkout our current cooperations to see Cloudgene in Action:. This server provides a free ge...

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