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Mean Ellenberg indicator values: too good to be true | David Zelený
https://davidzeleny.wordpress.com/2012/09/23/ellenberg-values-too-good-to-be-true
About me and this blog. Mean Ellenberg indicator values: too good to be true. I wrote an R code and later also a simple clicking program (MoPeT). Running in R and calculating modified permutation tests, which is otherwise not easy to do. I presented the results in 2009 IAVS in Crete and later published a paper in JVS. This entry was posted in about research. September 23, 2012. Gap Light Analyser for 64 bit Windows. TWINSPAN in R →. Leave a Reply Cancel reply. Enter your comment here. You are commenting ...
TWINSPAN in R | David Zelený
https://davidzeleny.wordpress.com/2015/05/10/twinspan-in-r
About me and this blog. TWINSPAN is perhaps one of the most popular clustering methods (at least among vegetation ecologists), which is not implemented in R. R-sig-eco forum has several posts. Recently, I got a simple idea, how to make TWINSPAN work in R, and how to extend this implementation also for modified TWINSPAN. The way I used is somewhat clumsy, but it seems to work. I used the. File, which is an executable program based on original FORTRAN library written by Mark O. Hill (author of the algo...
David Zelený | David Zelený
https://davidzeleny.wordpress.com/author/davidzeleny
About me and this blog. Author Archives: David Zelený. Adjusted R2 in partial constrained ordination: the difference between R (vegan) and CANOCO 5. Recently I used R package. To recalculate several partial RDA analyses, which were originally calculated in CANOCO 5 (C5). Partial RDA (pRDA) is a constrained ordination which contains both explanatory variables and covariables. To my surprise, the values of explained variation (. And adjusted explained variation (. And C5, with values in. In which variation...
About me and this blog | David Zelený
https://davidzeleny.wordpress.com/about
About me and this blog. About me and this blog. I am vegetation ecologist, studying patterns of alpha and beta diversity of plant communities along environmental gradients, processes generating spatial pattern and trait-based assembly rules. I am also interested in vegetation classification, and general methodological aspects of (mainly multivariate) data analysis. Recently, I shifted my focus from temperate vegetation in Europe to ecosystems of subtropical East Asia. Leave a Reply Cancel reply. Blog at ...
Gap Light Analyser for 64 bit Windows | David Zelený
https://davidzeleny.wordpress.com/2012/07/16/gap-light-analyser-for-64-bit-windows-2
About me and this blog. Gap Light Analyser for 64 bit Windows. On the last terrain excursion from geobotany, we were facing the problem with Gap Light Analyser. But both has the same issue like GLA – they can’t run on 64-bit machine (at least I have not succeeded to install them). There is also commercial software (e.g., HemiView. But I didn’t purchase it, so I have no idea if it works (I guess it should). There is a paper. This entry was posted in technicalities. July 16, 2012. Dear David Zeleny,. I wan...
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Software/R scripts [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/software
The following are software applications (based on R-project. I have written, mostly for analysis of vegetation data. They are in different stage of development, but should work without too much struggling. Basically they are R scripts wrapped into user friendly and clickable TclTk interface, which allows using them without even elementary knowledge of R. Modified permutation test for mean Ellenberg indicator values (MoPeT). MoPeT website with detail description. Cocktail Determination Key (CoDeK). JUICE-...
Teaching [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/teaching
Institute of Ecology and Evolutionary Biology, College of Life Science, National Taiwan University, Taiwan. EEB5082 (B44U1940) Introduction to R for Ecologists (R語言在生態學的應用). Winter semester of odd years, 3 credits (3 hours per week, theory R lab), in English. EEB5083 (B44U1950) Numerical Methods in Community Ecology (群聚生態學分析方法). Since summer semester 104-2, every year, 3 credits (theory R lab), in English. EEB5084 (B44U1960) Methods of Vegetation Survey (植群調查方法與實作). EEB 5085 Vegetation Ecology (植群生態學).
About me [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/aboutme
I am vegetation ecologist, studying ecology of plant communities, namely their alpha and beta diversity, processes generating their spatial pattern and trait-based assembly rules. I am also interested in vegetation classification, and general methodological aspects of (mainly multivariate) data analysis. Recently, I shifted my focus from temperate vegetation in Europe to ecosystems of subtropical East Asia. Academic Hub of NTU.
Conferences [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/conf
2016): Jumping on the bandwagon of beta diversity partitioning (NTU and NTNU Joint Symposium on Ecology and Evolutionary Biology, Taipei, Taiwan, 22 May 2016, oral talk). Li C-F. et al. (2016): Beta diversity pattern of forest vegetation along elevation in Taiwan: what have we learned so far? Annual Meeting of the Taiwan Ecological Research Network in JiJi, Taiwan, 15-16 April 2016, oral presentation). 2014): Bias due to autocorrelation where no one expects it: the relationship between community-weighted...
R packages [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/rpackages
R implementation of TWINSPAN and modified TWINSPAN. Basically just a wrapper in R, maintaining communication between R and twinspan.exe program (using twinspan.exe, based on original Fortran code writtend by M.O.Hill, compiled by S. Hennekens and modified by P. Šmilauer). Details are in the blog post. Instructions how to install and use are on AnaDatR website. The whole code is on GitHub repository. Package for testing the significance of the relationship between. Link to repository on GitHub.com.
Publications [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/publications
Drop me an email if you would like to have pdf of some of the publications! Preprints (submitted for review). Zelený D. (2016) Bias in community-weighted mean analysis relating species attributes to sample attributes: justification and remedy. bioRxiv doi: 10.1101/046946. See also my blog post. Divíšek J., Storch D., Zelený D. Culek M. (accepted): Towards the spatial coherence of biogeographical regionalizations at sub-continental and landscape scales. De Bello F., Fibich P., Zelený D. Lososová Z., d...
Students [David Zelený (澤大衛)]
http://davidzeleny.net/doku.php/students
Students I currently supervise. Masaryk University, Brno, Czech Republic. Markéta Chudomelová, PhD student (. Determinants of spatial patterns in composition of plant communities. Forest vegetation of western part of Strážovské vrchy Mts. Effect of density of plant individuals on diversity of forest vegetation. Beta diversity of forest understory at intermediate scale. Islands of acidophilous grasslands in agricultural landscape: which processes influence the pattern of their species richness?
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Mitchnick v. Childs. Jeffrey Vanchiro (1976 – 2014). In addition to some other deep runs, this dude made the final table of a $1,000 event that week. When the final table participants were introduced over the PA system, on his turn, the tournament director said from Queens, New York, this gentleman is a world famous graffiti vandal. LOL, wat? I observed some of the final table, and the guy played cards with a distinctive flair his chips were flipped into the center of the table with a. Jeffrey and I grew...
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David Zelený - blog
Jak jsme postupně zjistili, nemohli jsme si náš výlet načasovat hůř - v červenci 2011 Čína slavila 60. výročí mírového osvobození Tibetu ( peaceful. Jak se o tom psalo. V oficiálním anglicky psaném čínském deníku China Daily. Kopii tohoto článku jsem našel i v diskusi na China Daily. Haruki Murakami. Četl jsem od něj skoro všechno, co vyšlo v českém překladu, a to zhruba v tomhle pořadí: Norské dřevo. Na jih od hranic, na západ od slunce. Ale neuspěl jsem, možná proto, že anglicky psanou beletrii moc nez...
David Zelený | Mind Snapshots
About me and this blog. TWINSPAN is perhaps one of the most popular clustering methods (at least among vegetation ecologists), which is not implemented in R. R-sig-eco forum has several posts. Recently, I got a simple idea, how to make TWINSPAN work in R, and how to extend this implementation also for modified TWINSPAN. The way I used is somewhat clumsy, but it seems to work. I used the. File, which is an executable program based on original FORTRAN library written by Mark O. Hill (author of the algo...
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About Rabbi David Zeller. Book - the soul of the story. Path of the Heart. Good night my sweetest children. Original watercolor displayed above by Hannah-Sara Zeller. Living Judaism is not meant to cut you off from the world around you. It is intended to keep you from getting cut off from the world within you. The Tree of Life. Meditations, Prayers and Practices of Mysticla Judaism. And Shevet ("sitting"): Center for Jewish Spirituality and Meditation. You can read about David. And the music CDs. כאן תוכ...
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