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PRABI-Doua: Homepage

The PRABI-Doua is devoted to bioinformatics tools available on-line or as downloadable software. Those tools are devoted to various research fields such as molecular evolution, phylogeny, comparative genomics, sequence databases and statistics in ecology.

http://doua.prabi.fr/

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PRABI-Doua: Homepage | doua.prabi.fr Reviews
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The PRABI-Doua is devoted to bioinformatics tools available on-line or as downloadable software. Those tools are devoted to various research fields such as molecular evolution, phylogeny, comparative genomics, sequence databases and statistics in ecology.
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PRABI-Doua: Homepage | doua.prabi.fr Reviews

https://doua.prabi.fr

The PRABI-Doua is devoted to bioinformatics tools available on-line or as downloadable software. Those tools are devoted to various research fields such as molecular evolution, phylogeny, comparative genomics, sequence databases and statistics in ecology.

INTERNAL PAGES

doua.prabi.fr doua.prabi.fr
1

PRABI-Doua: Partners

http://doua.prabi.fr/templates/partners

Pôle Rhône-Alpes de Bioinformatique Site Doua. Last modification on Jan 2014.

2

PRABI-Doua: Legacy

http://doua.prabi.fr/templates/legacy

Pôle Rhône-Alpes de Bioinformatique Site Doua. Online services, databases and downloadable software listed on this page are no longer maintained at PRABI-Doua. Therefore all the corresponding links are likely to be removed at any time by our services. Software developed at PRABI-Doua. Databases developed at PRABI-Doua. Database of homologous genes from Ensembl. Database of homologous processed pseudogenes. Database of homologous genes from vertebrates. Database of intraspecific sequence polymorphism.

3

PRABI-Doua: Homepage

http://doua.prabi.fr/main/index

Pôle Rhône-Alpes de Bioinformatique Site Doua. Is one of the six sites that are members of the PRABI. Bioinformatics regional center. Its aim is to promote research and software development in bioinformatics. Performed in the teams involved in this activity in the Doua campus area:. The Bioinformatics and Evolutionary Genomics. The Evolutionary Ecology and Population Processes. Last modification on Jan 2014.

4

PRABI-Doua: SeaView

http://doua.prabi.fr/software/seaview

Pôle Rhône-Alpes de Bioinformatique Site Doua. SeaView - Multiplatform GUI for molecular phylogeny. NEW: 64-bit version for the MS Windows platform. NEW: seaview uses PHYLIP v3.696. To compute parsimony trees. NEW: seaview can be run without GUI using a command line. NEW: seaview drives the PhyML v3.1. Program to compute maximum likelihood phylogenetic trees. NEW: seaview drives the Gblocks. Program to select blocks of conserved sites. NEW: seaview drives the Clustal &#937. SeaView drives programs muscle.

5

PRABI-Doua: CAP3 Sequence Assembly Program

http://doua.prabi.fr/software/cap3

Pôle Rhône-Alpes de Bioinformatique Site Doua. CAP3 Sequence Assembly Program. Enter your sequences in FASTA. Format (no more than 50 kb):. This form allows you to assemble a set of contiguous sequences (contigs) with the CAP3. If you use CAP3 in any published work, please cite the following reference:. Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res. For a more advanced usage of CAP3, it is recommended to install the original software on your local computers.

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pbil.univ-lyon1.fr pbil.univ-lyon1.fr

Hoppsigen (Homologous processed pseudogenes database)

http://pbil.univ-lyon1.fr/databases/hoppsigen.html

Homologous Processed Pseudogenes database rel 4.0). Hoppsigen is a nucleic database of homologous processed pseudogenes. The database is developped at the PBIL. Pôle Bioinformatique Lyonnais). What is a processed pseudogene? Processed pseudogenes are retroelements (like SINE and LINE). They are generated by two ways:. Reverse transcription of RNA messenger in germ line cells. Duplication of an existing processed pseudogene in germ line cells. Main interests to molecular evolution. 17 ( Thompson et al.

prabi.fr prabi.fr

PRABI : Pôle Rhône-Alpes de Bioinformatique / Rhone-Alpes Bioinformatics Center

http://www.prabi.fr/spip.php?page=sommaire

Labs and Research Groups. Is the Rhône-Alpes Bioinformatics Center, a IBiSA. Regional center member of the ReNaBi. French Network of Bioinformatic platforms). It gathers 12 research teams and/or platforms spread on six different sites. The PRABI has research, service and training activities in a large number of bioinformatics and biostatistics fields. Get the PRABI presentation in pdf here.

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Pôle Rhône-Alpes de Bioinformatique Site Doua. Is one of the six sites that are members of the PRABI. Bioinformatics regional center. Its aim is to promote research and software development in bioinformatics. Performed in the teams involved in this activity in the Doua campus area:. The Bioinformatics and Evolutionary Genomics. The Evolutionary Ecology and Population Processes. Last modification on Jan 2014.

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