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drive5 bioinformatics software and services

Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. Multiple sequence alignment. Faster and more accurate than CLUSTALW. Primer and assay design. Optimize primers and assays for pathogen detection, human variant detection, community analysis and more. 16S / SSU sequence analysis. Resources for marker gene metagenomics. Academic research, business partnerships, project design, training and management. Challenging computational biology problem to solve?

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drive5 bioinformatics software and services | drive5.com Reviews

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Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. Multiple sequence alignment. Faster and more accurate than CLUSTALW. Primer and assay design. Optimize primers and assays for pathogen detection, human variant detection, community analysis and more. 16S / SSU sequence analysis. Resources for marker gene metagenomics. Academic research, business partnerships, project design, training and management. Challenging computational biology problem to solve?

<META> KEYWORDS

1 software

2 services

3 usearch

4 muscle

5 consulting and collaboration

6 algorithm development

7 drive5 can help

8 publications

9 coupons

10 reviews

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drive5 bioinformatics software and services | drive5.com Reviews

https://drive5.com

Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. Multiple sequence alignment. Faster and more accurate than CLUSTALW. Primer and assay design. Optimize primers and assays for pathogen detection, human variant detection, community analysis and more. 16S / SSU sequence analysis. Resources for marker gene metagenomics. Academic research, business partnerships, project design, training and management. Challenging computational biology problem to solve?

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drive5.com

1

Software

http://www.drive5.com/software.html

Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. Multiple sequence alignment. Faster and more accurate than CLUSTALW. OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity measures. De novo genome repeat finder. Detection of CRISPR repeats in bacterial genomes. Compare two multiple alignments for benchmarking. Protein Reference Alignment Database. Selected multiple alignment benchmarks in a standardized FASTA format.

2

Primer and assay design

http://www.drive5.com/assay.html

I have developed new, unpublished methods for optimizing primers and assays for various applications. I am working on writing a paper and will update this page with more information soon. For now, if you have a primer or assay development challenge then email me.

3

Papers

http://www.drive5.com/papers.html

Computational biology and bioinformatics. Edgar, R.C. (1985), Basic techniques of Euclidean lattice gauge theory,. Fortschritte der Physik 33(2), 57-116. Edgar, R.C. (1982), Generalized actions for lattice gauge models,. Nucl Phys. B 200(FS4), 345-354. Edgar, R.C. (1981), A roughening effect in small Wilson loops,. J Phys. G 7(10), L215 219. Edgar, R.C., McRossen, L. and Moriarty, K J.M. (1981), The specific heat of SU(3) lattice gauge theory,. J Phys. G 7(5), 85 88.

4

MUSCLE

http://www.drive5.com/muscle

MUSCLE has been cited by. Last updated 19 Aug 2016. Popular multiple alignment software. MUSCLE is one of the most widely-used methods in biology. On average, MUSCLE is cited by ten new papers every day. Fast, accurate and easy to use. There are two papers. The first (NAR) introduced the algorithm, and is the primary citation if you use the program. The second (BMC Bioinformatics) gives more technical details, including descriptions of non-default options. 5):1792-1797 [ Link to PubMed.

5

UCHIME algorithm

http://www.drive5.com/uchime

Comparison of UCHIME and DECIPHER. I now consider de novo. UCHIME obsolete for OTU clustering pipelines because UPARSE. Is a superior approach. UCHIME is an algorithm for detecting chimeric sequences. It is implemented in the uchime ref. See UCHIME in practice. For a detailed discussion of the assumptions and limitations of the method. This search can be performed with a reference database of parent sequences provided by the user, or the database can be constructed de novo. UCHIME parameters are optimize...

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petsocialnet.com

Primer and assay design

http://www.petsocialnet.com/assay.html

I have developed new, unpublished methods for optimizing primers and assays for various applications. I am working on writing a paper and will update this page with more information soon. For now, if you have a primer or assay development challenge then email me.

petsocialnet.com

Software

http://www.petsocialnet.com/software.html

Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. Multiple sequence alignment. Faster and more accurate than CLUSTALW. OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity measures. De novo genome repeat finder. Detection of CRISPR repeats in bacterial genomes. Compare two multiple alignments for benchmarking. Protein Reference Alignment Database. Selected multiple alignment benchmarks in a standardized FASTA format.

petsocialnet.com

Services

http://www.petsocialnet.com/services.html

Could I help your start-up? I'm seeking opportunites to leverage my unique combination of business experience and scientific skills. If you have a good plan and are willing to offer equity share, then I'll help you develop your business and share the risk and rewards with you. Consulting services are provided to academic and commercial clients on an hourly paid or fixed price basis for well-defined deliverables. Rates are negotiated on a case-by-case basis. Maybe I can help- let's discuss.

petsocialnet.com

SSU metagenomics resources

http://www.petsocialnet.com/ssu.html

biological.adelaide.edu.au

Centre for Bioinformatics and Computational Genetics | Centre for Bioinformatics and Computational Genetics

https://biological.adelaide.edu.au/bioinf

Centre for Bioinformatics and Computational Genetics. Centre for Bioinformatics and Computational Genetics. Centre for Bioinformatics and Computational Genetics. Centre for Bioinformatics and Computational Genetics. Most of the Centre's work has applications in agricultural livestock, but also yields insight into mammalian genome evolution. Research in the Centre for Bioinformatics and Computational Genetics. Creating new software tools for biologists to analyse genomic data. In either area, or related t...

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drive5.com

drive5 bioinformatics software and services

Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. Multiple sequence alignment. Faster and more accurate than CLUSTALW. Primer and assay design. Optimize primers and assays for pathogen detection, human variant detection, community analysis and more. 16S / SSU sequence analysis. Resources for marker gene metagenomics. Academic research, business partnerships, project design, training and management. Challenging computational biology problem to solve?

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