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Helical Interaction in Membrane Proteins

Membrane protein structure using Chime displays.

http://helix.gersteinlab.org/

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Helical Interaction in Membrane Proteins | helix.gersteinlab.org Reviews
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Membrane protein structure using Chime displays.
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Helical Interaction in Membrane Proteins | helix.gersteinlab.org Reviews

https://helix.gersteinlab.org

Membrane protein structure using Chime displays.

INTERNAL PAGES

helix.gersteinlab.org helix.gersteinlab.org
1

Helix-Helix Interactions in Proteins

http://helix.gersteinlab.org/mem/index-col.html

Gallery of membrane proteins. Images in the gallery are extracted from the Protein Data Bank ( http:/ www.rcsb.org/pdb. Clicking on the PDB ID will open the PDB Explorer for that protein in a new window. This listing of membrane proteins is based on the page curated by S. White. The original database of motions in membrane proteins can be found here. M Gerstein and C Chothia (1999), 'Proteins in Motion']. Conformational change analysis (morph). PROSTAGLANDIN H2 SYNTHASE-1 (CYCLOOXYGENASE I). CRYSTAL STRU...

2

Helical Interaction in Membrane Proteins

http://helix.gersteinlab.org/HITdownloads.html

HIT: Helix Interaction Tools. Part of a larger package; see README. And 'Other tools' section). Helix-helix contact area calculations. Includes AS, MS, and cylinder intersection calculations) Help. List of available downloads is being updated with command-line versions of helix analysis tools. Please keep checking for additional downloads! Created by A. Counterman. Last modified by A. Counterman, 3/2006. For comments please email to helix@bioinfo.mbb.yale.edu.

3

Helical Interaction in Membrane Proteins

http://helix.gersteinlab.org//cgi-bin/TM_intro.cgi

Helical interaction has been clustered into three different classes of interaction pairs:. Transmembrane helix - transmembrane helix (TM-TM). Transmembrane helix - non transmembrane helix (TM-NTM). Non transmembrane helix -non transmembrane helix (NTM-NTM). Choose a PDB entry from the following lists:. 1H2S MENBRANE PROTEIN COMPLEX. 2RCR PHOTOSYNTHETIC REACTION CENTER. 1LGH LIGHT HARVESTING COMPLEX. Nr of PDB entries in the listing:63. 1LGH LIGHT HARVESTING COMPLEX. 1H2S MENBRANE PROTEIN COMPLEX.

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Helix-Helix Interactions in Proteins:. Tools for interface analysis of interacting helices and a database of membrane proteins. New proteomics page coming soon! HIT: Helix Interaction Tool. Structure-coordinate files in PDB format can be uploaded. Upload format: pdb files and name convention: filename.pdb). Secondary structure assignment is performed and helical interactions are calculated. Interacting helices, residues at the interaction surface and surface properties are displayed.

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