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Bio, Stat & CS

Bio, Stat and CS. Add a new user to the EC2 instance with private key. To add a new user to the system, use the adduser. Command followed by any relevant options and the name of the user you wish to create. If you are adding a user to an Ubuntu system, you should add the. Option to avoid adding a password to the account. This command adds the. Account to the system (with an entry in the. File), creates a. Group, and creates a home directory for the account in. That contains a public key. Ssh-rsa AAAAB3Nz...

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Bio, Stat and CS. Add a new user to the EC2 instance with private key. To add a new user to the system, use the adduser. Command followed by any relevant options and the name of the user you wish to create. If you are adding a user to an Ubuntu system, you should add the. Option to avoid adding a password to the account. This command adds the. Account to the system (with an entry in the. File), creates a. Group, and creates a home directory for the account in. That contains a public key. Ssh-rsa AAAAB3Nz...

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Bio, Stat & CS | hpbase.blogspot.com Reviews

https://hpbase.blogspot.com

Bio, Stat and CS. Add a new user to the EC2 instance with private key. To add a new user to the system, use the adduser. Command followed by any relevant options and the name of the user you wish to create. If you are adding a user to an Ubuntu system, you should add the. Option to avoid adding a password to the account. This command adds the. Account to the system (with an entry in the. File), creates a. Group, and creates a home directory for the account in. That contains a public key. Ssh-rsa AAAAB3Nz...

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hpbase.blogspot.com

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Bio, Stat & CS: Calculate length distribution from BAM/SAM/FASTA/FASTQ files

http://hpbase.blogspot.com/2014/04/calculate-length-distribution-from.html

Bio, Stat and CS. Calculate length distribution from BAM/SAM/FASTA/FASTQ files. Samtools view Seqfile.bam. Awk '{OFS=" t"; print " "$1" n"$10}' awk '{if(NR%2= 0){print length($0)} ' sort uniq -c. Samtools view -S Seqfile.sam awk '{OFS=" t"; print " "$1" n"$10}' awk '{if(NR%2= 0){print length($0)} ' sort uniq -c. Cat Seqfile.fa awk '{if(NR%2= 0){print length($0)} ' sort uniq -c. Cat Seqfile.fq awk '{if(NR%4= 2) print length($1)}' sort uniq -c. Subscribe to: Post Comments (Atom).

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Bio, Stat & CS: NGS alignment software

http://hpbase.blogspot.com/2013/09/ngs-alignment-software.html

Bio, Stat and CS. Http:/ 1001genomes.org/downloads/shore.html. Http:/ 1001genomes.org/downloads/genomemapper.html. Mapping and Assembly with Qualities. Transcript assembly, differential expression, and differential regulation for RNA-Seq. IGV) alignment viewing software. Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA. Thus the ID tag doesn't really have a biological meaning, it is just a way to compress data.

3

Bio, Stat & CS: Creating a database for BWA and BWA-SW

http://hpbase.blogspot.com/2013/09/creating-database-for-bwa-and-bwa-sw.html

Bio, Stat and CS. Creating a database for BWA and BWA-SW. The following example shows how to create a database from the human reference genome for the use with BWA, BWA-SW and DeconSeq. The commands used below assume a Unix-based operating system. For i in {1.22} X Y MT; do wget ftp:/ ftp.ncbi.nih.gov/genomes/H sapiens/Assembled chromosomes/seq/hs ref GRCh37.p2 chr$i.fa.gz; done. Extracting and joining data. Splitting sequences by long repeats of ambiguous base N. In addition to short sequences, sequence...

4

Bio, Stat & CS: Import large file into MySQL : use SOURCE command

http://hpbase.blogspot.com/2010/07/import-large-file-into-mysql-use-source.html

Bio, Stat and CS. Import large file into MySQL : use SOURCE command. Import Large data file into MySQL. How to import a large sql file into mysql when phpmyadmin has hit it’s 5 or so megabyte limit? This is a common problem and the SERPs are terrible so I will place this up here to make it easier to find. 8226;Create the destination database in MySQL. 8226;Put the .sql file into a convenient location (the MySQL /bin directory would be perfect w/XAMPP). 8226;login to MySQl. How to import large file.

5

Bio, Stat & CS: What Is Tissue Homogenization?

http://hpbase.blogspot.com/2013/04/what-is-tissue-homogenization.html

Bio, Stat and CS. What Is Tissue Homogenization? Subscribe to: Post Comments (Atom). Simple template. Powered by Blogger.

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Bio, Stat & CS

Bio, Stat and CS. Add a new user to the EC2 instance with private key. To add a new user to the system, use the adduser. Command followed by any relevant options and the name of the user you wish to create. If you are adding a user to an Ubuntu system, you should add the. Option to avoid adding a password to the account. This command adds the. Account to the system (with an entry in the. File), creates a. Group, and creates a home directory for the account in. That contains a public key. Ssh-rsa AAAAB3Nz...

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