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iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions | integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM)

The Environmental Niche Atlas: Global Mapping of Microbial Functions.  The goal of this project is to quantify patterns of functional diversity in marine microbial communities by developing new automated tools to catalog and estimate the global distributions of all microbial protein families and their associated functions from high-throughput sequence data. We have the following scientific…

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iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions | integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM) | iseem2.wordpress.com Reviews
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The Environmental Niche Atlas: Global Mapping of Microbial Functions.  The goal of this project is to quantify patterns of functional diversity in marine microbial communities by developing new automated tools to catalog and estimate the global distributions of all microbial protein families and their associated functions from high-throughput sequence data. We have the following scientific…
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iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions | integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM) | iseem2.wordpress.com Reviews

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The Environmental Niche Atlas: Global Mapping of Microbial Functions.  The goal of this project is to quantify patterns of functional diversity in marine microbial communities by developing new automated tools to catalog and estimate the global distributions of all microbial protein families and their associated functions from high-throughput sequence data. We have the following scientific…

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iSEEM1 summary | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions

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ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. The iSEEM Project, funded by the Gordon and Betty Moore Foundation. Takes an integrated, interdisciplinary approach to metagenomic analysis. We will be working with the Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis (CAMERA). Leave a Reply Cancel reply.

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iSEEM1 | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions

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ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. We use the term metagenomics to refer to shotgun sequencing DNA from environmental samples. The NAS report identifies five challenges in metagenomics: need for interdisciplinary teams, role of government, methods development, complexities of data analysis and need for databases. Metagenomic anal...

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sFAMS | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions

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ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. Https:/ github.com/gjospin/Sfam updater. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). You are commenting using your WordPress.com account. ( Log Out. Notify me of new comments via email.

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Software | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions

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ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. PhyEco: A phylogenetically informative marker gene database. TreeOTU: Phylogenetic clustering of protein coding sequences into operational taxonomic units (OTUs). Software for automated phylogenomic analysis for whole genome phylogenies and metagenomic analyses. Publicly available. Fill in your ...

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People | iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions

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ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. Lab of Katherine Pollard. Lab of Jonathan Eisen. Post doc: Sarah Hird. Bioinformatics Engineer: Guillaume Jospin. PhD Student: Ladan Doroud. Project Scientist: Dongying Wu. Lab of Jonathan Eisen. Post doc: Morgan Langille. Now Asst. Prof. at Dalhausie University). PhD Student: Srijak Bhatnagar.

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iSEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions | integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM)

ISEEM Phase 2: The Environmental Niche Atlas: Global Mapping of Microbial Functions. Integrating Statistical Evolutionary, and Ecological Approaches to Metagenomics (iSEEM). ISEEM related references at citeUlike. The Environmental Niche Atlas: Global Mapping of Microbial Functions. Build a database of gene families from sequenced genomes (organismal and viral) that is both more comprehensive than currently available resources and readily updated in response to the exponential increase in genomic data,.

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