siepellab.org
adamsiepel | Siepel lab
https://siepellab.org/author/adamsiepel
Thoughts on genomics, evolution, gene regulation and other things. A Short History of Quantitative Biology at Cold Spring Harbor Laboratory. March 2, 2015. A Short History of Quantitative Biology at Cold Spring Harbor Laboratory. Delbruck and Luria relaxing at Cold Spring Harbor. Rich Roberts at CSHL in 1975. The Hillside Campus at CSHL, home to the Simons Center for Quantitative Biology. For a number of years, quantitative biology research continued in the absence of a designated unit, but in 2008, the ...
blog.mlin.net
Mike's Fourth Try: February 2013
http://blog.mlin.net/2013_02_01_archive.html
Wednesday, February 27, 2013. A true story about Big Science. Once, I decided to consult the literature for details about how to perform a certain selection test using PAML. I turned to my officemate Matt. And asked if he knew of any papers using it. He suggested three relevant papers, which indeed described details of that test, at least in their supplements. I was an author on two of those papers! Links to this post. Sunday, February 24, 2013. My thoughts on the immortality of television sets. The manu...
keepnote.org
Games - Matt Rasmussen
http://keepnote.org/games
Do you need to waste some time? Then this may help. These are some javascript games I made in high school. I updated them to work with current browsers. Enjoy. Last Updated: June 25, 2006.
keepnote.org
KeepNote: Note taking and organization
http://www.keepnote.org/index.shtml
KeepNote is a note taking application that works on Windows, Linux, and MacOS X. With KeepNote, you can store your class notes, TODO lists, research notes, journal entries, paper outlines, etc in a simple notebook hierarchy with rich-text formatting, images, and more. Using full-text search, you can retrieve any note for later reference. KeepNote is designed to be cross-platform (implemented in Python. Read more about KeepNote's design philosophy. Or follow my development ideas on twitter ( @mattrasmus.
keepnote.org
KeepNote: Note taking and organization - Screenshots
http://www.keepnote.org/screenshots.shtml
Here are a few screenshots of example notebooks: class notes with screenshots of slides, research notes with figures, and storing cheat-sheets and tips for coding. The interface somewhat resembles a traditional email program (like Outlook), with a hierarchy on the left, and a listview on top. Hundreds of notes can be viewed and sorted in many ways (by title, creation date, manual sort order, etc.). Customization, images, web links. Or clicking the link button and start typing the name of a note. An a...
siepellab.org
Our Paper: Genome-wide inference of ancestral recombination graphs | Siepel lab
https://siepellab.org/2014/11/08/our-paper-genome-wide-inference-of-ancestral-recombination-graphs
Thoughts on genomics, evolution, gene regulation and other things. Our Paper: Genome-wide inference of ancestral recombination graphs. November 8, 2014. This article originally appeared as a guest post. On Haldane’s Sieve. Dated July 2, 2013. It is re-posted here for completeness.). This guest post is by Adam Siepel. On his paper with Matthew Rasmussen. Rasmussen and Siepel Genome-wide inference of ancestral recombination graphs. Inference of Ancestral Recombination Graphs. What is the ARG? The problem w...
keepnote.org
boxcutter: command line-driven screenshot program for Windows
http://keepnote.org/boxcutter
201101.02 - Release boxcutter 1.5. Fixed filename bug with PNG output. 201011.14 - Release boxcutter 1.4. Added multi-monitor support and PNG output. 200906.04 - Release boxcutter 1.3. Add a faster program. 200812.01 - Release boxcutter 1.2. Small bug fixes and more output messages. Please report any bugs you may find to my google code issues tracker. 200811.08 - Release boxcutter 1.1. Added option fullscreen screenshot and fixed console output bug. 200808.09 - Release boxcutter 1.0. Boxcutter 1.3: b...
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