phantomdb.ucsd.edu
The PHANTOM database
http://phantomdb.ucsd.edu/geneportal
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. The Gene Search Portal allows you to search with one gene identifier such as a TAIR. Identifier for locus (AT2G45190) or gene model (AT2G45190.1) or alternatively a UniProt. Family definitions included in TAIR8. PP2C and PPP type phosphatases. PlnTFDB (Transcriptionfactors v3.0). Family definitions included in TAIR7. Biology Division of UCSD.
foodfunc.agr.ibaraki.ac.jp
リンク集
http://foodfunc.agr.ibaraki.ac.jp/link.html
Protein Data Bank of Japan. DNA Data Bank of Japan. Nature Structural & Molecular Biology. Proceedings of the National Academy of Sciences USA. The Journal of Biological Chemistry 最新、１年後以降は. JMB (Journal of Molecular Biology). Biochemical and Biophysical Research Communications. Biochimica et Biophysica Acta - Proteins and Proteomics. Proteins: Structure, Function, and Bioinformatics. Acta Crystallographica Section D: Biological Crystallography. IBMB (Insect Biochemistry and Molecular Biology).
fruity-updates.blogspot.com
Fruity Updates........By IIDSians: Structure and Interpretation of Computer Programs (SICP)
http://fruity-updates.blogspot.com/2012/09/structure-and-interpretation-of.html
Fruity Updates.By IIDSians. WE MOVE THE WORD. , WE ARE IIDSians - - -. Friday, 7 September 2012. Structure and Interpretation of Computer Programs (SICP). Structure and Interpretation of Computer Programs. Using a dialect of the Lisp programming language known as Scheme, the book explains core computer science concepts, including abstraction, recursion, interpreters and metalinguistic abstraction, and teaches modular programming. Labels: Development /Programming Books. Subscribe to: Post Comments (Atom).
fruity-updates.blogspot.com
Fruity Updates........By IIDSians: An Introduction to Genetic Algorithms- Melanie Mitchell
http://fruity-updates.blogspot.com/2012/09/an-introduction-to-genetic-algorithms.html
Fruity Updates.By IIDSians. WE MOVE THE WORD. , WE ARE IIDSians - - -. Wednesday, 5 September 2012. An Introduction to Genetic Algorithms- Melanie Mitchell. Subscribe to: Post Comments (Atom). Bioinfo Ist sem Papers. Lessons for life -by Indians. A Practical Approach to Microarray Data Analysis. Structure and Interpretation of Computer Programs . Computational Biology: Genomes, Networks, Evolutio. An Introduction to Genetic Algorithms- Melanie Mit. DNA Molecular Structure and Dynamics.
genesandcoinflips.wordpress.com
May | 2013 | Genes and coinflips
https://genesandcoinflips.wordpress.com/2013/05
Genomics, math and science. May 10, 2013. I wanted to understand proteases and their classification a little bit better. The MEROPS. Database classifies most of the knowledge we currently have on the subject. The database is manually curated, and their papers offer a rather sparing description of computational methods. The most recent publication is here. A bulk of database and classification description transcribed from here. 1) The chemical mechanism of catalysis. 2) Details of the catalyzed reaction.
graeflab.stanford.edu
Graef Lab-Stanford University
http://graeflab.stanford.edu/links.html
Affymetrix Netaffx Analysis Center. Biomolecular Interaction Network Database (BIND). Digital Atlas of Geneexpression. Digital Transcriptome of the Mouse. NIH Computational Molecular Biology. Http:/ www.med.jhu.edu/medcenter/primer/primer.cgi. Http:/ www.ch.embnet.org/software/BOX form.html. Http:/ www.informatics.jax.org/. Http:/ jaxmice.jax.org/query/f? Database of Genomic Variants. List of Gene Knock-outs. National Human Genome Research Institute. Brain and Tissue Bank. NIH Chemical Genomics Center.
elm.eu.org
ELM - Links
http://elm.eu.org/infos/links.html
The Eukaryotic Linear Motif resource for. Functional Sites in Proteins. The ELM Conservation Scorer assigns a score to each ELM which corresponds to this ELM's conservation throughout homologous sequences. Exploring Interactions of Linear Motifs. The Phospho.ELM database contains a collection of experimentally verified Serine, Threonine and Tyrosine sites in metazoan proteins. The compendium of conditional regulatory interaction interfaces. Other general motif resources. GPI Modification Site Prediction.
vblgene.org
Лаборатория экологии возбудителей инфекций НИИ эпидемиологии и микробиологии им. Н.Ф.Гамалеи РАМН
http://www.vblgene.org/links.html
Сайты, посвященные микробиологии и молекулярной биологии. Российский сайт молекулярных биологов. Сайт НИИЭМ им. Н.Ф. Гамалеи РАМН. European Molecular Biology Organization. Federation of European Microbiological societies. Merops.sanger.ac.uk. MEROPS the peptidase database. PubMLST - Multilocus Sequence Typing (MLST) databases. Pathogen Functional Genomics Resource Center. Cbsusrv01.tc.cornell.edu/users/pathogentracker/pt2/login/login.aspx. Pathogen Tracker Cornell Food Safety Lab database.
anisfadhilahzuzu.blogspot.com
L for Life: January 2010
http://anisfadhilahzuzu.blogspot.com/2010_01_01_archive.html
On Jan 13, 2010. Lets learn Computer Aided Drug Design or CADD. Basically we must have basic knowledge of bioinformatic tools ans Protein Data Bank. Bioinformatic tools provide software that helps researchers to find sequence and classify unknown organism. Normally in molecular biology.This tools can save the cost and times. A) MEROPS - Provide database of peptidase in organism. Website: http:/ merops.sanger.ac.uk/. SEARCHES - Search by Name. Protein blast - blastp. This software need JAVA. Output file i...
gydb.org
Gypsy Database 2.0
http://www.gydb.org/index.php/GINGER1
GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Gypsy-Integrase-Related Type 1 ( GINGER1. Is a recently described pool of exon-intron transposons ( Bao et al. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINGER1. Cysteine protease domain, or an Ulp1. Element...
