mobyle.rpbs.univ-paris-diderot.fr

bioserv.rpbs.univ-paris-diderot.fr

Frog: FRee Online druG conformation generation - Help Page

http://bioserv.rpbs.univ-paris-diderot.fr/services/Frog2

FRee On line druG conformation generation. Is a major evolution of Frog v1.01. It improves several issues of Frog1 (among which ring hydrogen management during conformational sampling, on the fly ring conformation generation, better diversity in conformational sampling, .). 3D generation from 1D/2D. Frog2 is able to perform isomer identification from ambiguous compound description. Frog is able to generate multi-conformations per isomer. Energy minimization. Frog2 is able to minimize compounds. 2006: Fro...

bioserv.rpbs.univ-paris-diderot.fr

SA-Frag candidate fragment search Server

http://bioserv.rpbs.univ-paris-diderot.fr/services/SAFrag

A step by step tutorial. Welcome to the SA-Frag service! SA-Frag is a service that will, given an amino acid sequence, return 3D fragments predicted to match the various positions of the sequence. SA-Frag will thus return an alignment of the fragments identified with the query and a collection of 3D structures corresponding to the fragments in the PDB format. Server @ the RPBS Mobyle. When using this service, please cite the following reference:. PLoS One. 2013 Nov 26;8(11). Amino acid sequence size:.

bioserv.rpbs.univ-paris-diderot.fr

SABBAC v1.2: Help

http://bioserv.rpbs.univ-paris-diderot.fr/services/SABBAC

SABBAC v1.2: Structural Alphabet based protein Backbone Builder from Alpha Carbon trace. SABBAC is an on-line service devoted to protein backbone reconstruction from alpha-carbon trace. It is based on the assembly of fragments issued from library of reduced size, resulting from the encoding of the protein trace in an HMM-derived structural alphabet. The assembly of the fragments is achieved by a greedy algorithm [ 3. Using an energy based scoring inspired from the OPEP force field [ 5. Input a PDB File.

mti.univ-paris-diderot.fr

RPBS: Mobyle

http://www.mti.univ-paris-diderot.fr/recherche/plateformes/plateforme-mobyle

Se souvenir de moi. Mot de passe oublié? Equipe 1 (Dr P. Tufféry). Equipe 2 (Prs. A-C.Camproux and O. Taboureau). Computational approaches applied to pharmacological profiling. Equipe 3 (Dr. M. Miteva). Virtual screening and rational design of protein-protein interaction modulators with balanced ADME-Tox properties. Se souvenir de moi. Mot de passe oublié? MTi est impliqué dans la Ressource Parisienne en Bioinformatique Structurale (RPBS) une plate-forme de bioinformatique structurale. 35 Rue Hélène Brion.

mti.univ-paris-diderot.fr

Annuaire

http://www.mti.univ-paris-diderot.fr/annuaire

Se souvenir de moi. Mot de passe oublié? Equipe 1 (Dr P. Tufféry). Equipe 2 (Prs. A-C.Camproux and O. Taboureau). Computational approaches applied to pharmacological profiling. Equipe 3 (Dr. M. Miteva). Virtual screening and rational design of protein-protein interaction modulators with balanced ADME-Tox properties. Se souvenir de moi. Mot de passe oublié? Télécharger au format PDF. 33)1 57 27 83 88. 33)1 57 27 83 86. Administration système et réseaux. 33)1 57 27 83 82. 33)1 57 27 83 74. 33)1 57 27 83 98.

mti.univ-paris-diderot.fr

CDithem

http://www.mti.univ-paris-diderot.fr/recherche/plateformes/plateforme-cdithem

Se souvenir de moi. Mot de passe oublié? Equipe 1 (Dr P. Tufféry). Equipe 2 (Prs. A-C.Camproux and O. Taboureau). Computational approaches applied to pharmacological profiling. Equipe 3 (Dr. M. Miteva). Virtual screening and rational design of protein-protein interaction modulators with balanced ADME-Tox properties. Se souvenir de moi. Mot de passe oublié? Consortium for Discovery and Innovation in Therapy and Medicine. Les services uniques de CDithem. Sont dédiés aux biologistes. Ou de drug discovery.

mti.univ-paris-diderot.fr

Equipe 1 (Dr P. Tufféry)

http://www.mti.univ-paris-diderot.fr/recherche/equipe-1

Se souvenir de moi. Mot de passe oublié? Equipe 1 (Dr P. Tufféry). Equipe 2 (Prs. A-C.Camproux and O. Taboureau). Computational approaches applied to pharmacological profiling. Equipe 3 (Dr. M. Miteva). Virtual screening and rational design of protein-protein interaction modulators with balanced ADME-Tox properties. Se souvenir de moi. Mot de passe oublié? Equipe 1 du Dr P. Tufféry (DR Inserm). Prédiction de novo de la structure 3D des peptides et des fragments protéiques. Nous avons développé PEP-FOLD.

bioserv.rpbs.univ-paris-diderot.fr

RPBS

http://bioserv.rpbs.univ-paris-diderot.fr/services.html

Provides means to search for 3D sub structures between structures. The search is general: 3DMSS-Sites searches for similar "clouds" of coordinates between sets of coordinates, i.e it is independent on the order of the atoms of the structures. Atomic or residue type compatibilities can be defined to avoid non relevant pairings. Escalier V, Pothier J, Soldano H, Viari A. Pairwise and multiple identification of three-dimensional common substructures in proteins. J Comput Biol. 1998 Spring;5(1):41-56. Among ...

bioserv.rpbs.univ-paris-diderot.fr

MTiOpenScreen

http://bioserv.rpbs.univ-paris-diderot.fr/services/MTiOpenScreen

A service to dock small compounds. Accessing to the service. Accessing to the service. Submitting a new job. Accessing to the service. Dedicated to small molecule docking and chemical library virtual screening. The services are hosted on the Mobyle Portal. For specific requirements or reporting possible bugs, please write to us. Blind Docking using AutoDock. The Lamarckian genetic algorithm (LGA) [1]. Binding Site Docking using AutoDock. The Lamarckian genetic algorithm (LGA) [1]. Is used to generate ori...