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MZmine 2

MZmine 2 is an open-source software for mass spectrometry data processing.

http://mzmine.github.io/

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PAGE TITLE
MZmine 2 | mzmine.github.io Reviews
<META>
DESCRIPTION
MZmine 2 is an open-source software for mass spectrometry data processing.
<META>
KEYWORDS
1 features
2 general features
3 import and export
4 batch processing
5 raw data methods
6 filtering and smoothing
7 peak detection
8 peak list methods
9 gap filling
10 isotope detection
CONTENT
Page content here
KEYWORDS ON
PAGE
features,general features,import and export,batch processing,raw data methods,filtering and smoothing,peak detection,peak list methods,gap filling,isotope detection,filtering,alignment,normalization,identification,statistical analysis,cv plot,clustering
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MZmine 2 | mzmine.github.io Reviews

https://mzmine.github.io

MZmine 2 is an open-source software for mass spectrometry data processing.

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1

MZmine 2 - Documentation

http://mzmine.github.io/documentation.html

Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). The following documentation is available for getting familiar with MZmine 2 and its architecture. If you have further questions regarding the usage or development of MZmine, please contact the developers. This manual covers the general functionality of MZmine 2 including installation, batch mode and data processing. This tutorial written by Mark Earll covers the data processing features of MZmine 2.

2

MZmine 2 - Contributors

http://mzmine.github.io/contributors.html

Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). About Us - Contributors. Whitehead Institute for Biomedical Research, USA. Steno Diabetes Center, Denmark. Victor Manuel Treviño Alvarado. Okinawa Institute of Science and Technology, Japan. Syngenta, Ltd, UK. All contributions to the source code can be seen on GitHub for MZmine 2.

3

MZmine 2 - Download

http://mzmine.github.io/download.html

Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). MZmine 2.21 can be downloaded here. For details about the new features in each release, please see the change log. MZmine requires Java SE runtime (JRE) version 1.7 or later. We highly recommend installing the 64-bit version if you ar running a 64-bit operating system. 64-bit CPU with 4 or more cores. 4 GB RAM (The more the better). Verify your Java version here. Download the latest MZmine version from here.

4

MZmine 2 - Features

http://mzmine.github.io/features.html

Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). Raw data file formats. MZmine 2 can read and process both unit mass resolution and exact mass resolution (e.g. FTMS) data in both continuous and centroided modes, including fragmentation (MSn) scans. Supported data formats are:. MzML versions 1.0 and 1.1). MzXML versions 2.0 to 3.1). MzData versions 1.04 and 1.05). Peak detection is performed in a three-step manner: first, mass values are detected within each s...

5

MZmine 2 - Development

http://mzmine.github.io/development.html

Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). The MZmine 2 source code is available from the GitHub repository. You are welcome to redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2. Of the License, or (at your option) any later version. There are several steps you need to follow in order to contribute your code to MZmine. If you are not familiar with GitHub.

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Raw data file formats. Principal Component Analysis (PCA). Curvilinear Distant Analysis (CDA). Download v. 2.15. MZmine 2 is an open-source software for mass-spectrometry data processing, with the main focus on LC-MS data. It is based on the original MZmine toolbox described in the 2006 Bioinformatics publication. If you are interested in implementing your own data processing methods or help improve MZmine 2 then please check the development page. Process multiple raw files in batch mode and easily defin...

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