ruffus.org.uk

kokoko.fluxionary.net

Using the pipeline module ruffus with Python 3.2 | Kokoko

http://kokoko.fluxionary.net/using-the-pipeline-module-ruffus-with-python-3-2

Using the pipeline module ruffus with Python 3.2. The Python module ruffus. Is a great companion for setting up pipelines easily and quickly. Unfortunately the development has been focused on Python 2.x … until recently. There are some recent adaptations to get it running under Python 3.x but there are some modifications needed. At first download the development version of ruffus:. Svn checkout http:/ ruffus.googlecode.com/svn/trunk/ ruffus-read-only. Tool to for the code conversion:. As you can see.

kokoko.fluxionary.net

Code | Kokoko

http://kokoko.fluxionary.net/category/code

Sometimes things are easier than ones might have thought. I wanted to merge some mp3 files in the shell and found that this can simply be done using. Cat my file 1.mp3 my file 2.mp3 my file 3.mp3 combined files.mp3. Can handle the resulting files without any issue. Still, it’s recommended to fix the file header e.g. using. Avconv -i combined files.mp3 -acodec copy combined files fixed.mp3. I recently set up ownCloud. Version 6.0.2) at my web hoster domainfactory. At first I set up subdomain the. I figure...

genome.edu.au

Genomics Virtual Lab - Learn with GVL Tutorials

http://genome.edu.au/learn/learn

Launch your own GVL. Learn with GVL Tutorials. About the GVL Project. Learn with GVL Tutorials. The GVL project team have produced a number of tutorials and analysis protocols for:. There are a combination of basic and advanced galaxy tutorials and command line tutorials which give step by step instructions for an example analysis. Protocols outline the analysis methods and suggest and compare tools for each step rather than prescribe them. A tutorial for those who are very new to Galaxy. In this tutoria...

bcbio.wordpress.com

Summary from Bioinformatics Open Science Codefest 2013: Tools, infrastructure, standards and visualization | Blue Collar Bioinformatics

https://bcbio.wordpress.com/2013/07/18/summary-from-bioinformatics-open-science-codefest-2013-tools-infrastructure-standards-and-visualization

Summary from Bioinformatics Open Science Codefest 2013: Tools, infrastructure, standards and visualization. The 2013 Bioinformatics Open Source Conference (BOSC). Starts tomorrow in Berlin, Germany. It’s a yearly conference devoted to community-based software development projects supporting biological research. Members of the Open Bioinformatics Foundation. Discuss implementations and approaches to better provide interoperable and reusable software, libraries and pipelines. Kindly hosted Codefest 2013.

expertbiosystems.com

Expert Biosystems

http://www.expertbiosystems.com/links.html

A BIOINFORMATICS RESEARCH AND CONSULTING GROUP. Expert BioSystems (EBS), scientists and engineers have deatail knowledge of bioinformatics tools. EBS training department. Provides hands-on training for most bioinformatic tools. Following are partial list of bioinformatics tools, in alpha-betic order:. BLAST (Basic Local Alignment Search Tool). Finds regions of local similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the s...

kokoko.fluxionary.net

Python | Kokoko

http://kokoko.fluxionary.net/tag/python

Let’s face it – the Python packaging is not necessary famous to be one of the best *cough*. But the following issue was purely my fault: I made a stupid error when generating a Python package. I had a constellation like this:. My dummy project/ bin collide.py collide a module.py another module.py init .py README.txt setup.py. I generated a package based on this calling. Python setup.py sdist. Statement to load a module stored in the. If you do not use distribute/pip. 8211; please start doing so. For Pyth...

blog.pythonanywhere.com

New release -- new console with 256 colours, some fixes to task logging, and the P-thing. - PythonAnywhere News

http://blog.pythonanywhere.com/102

New release - new console with 256 colours, some fixes to task logging, and the P-thing. Exciting new deploy today! Obviously, the most important thing we did was to switch out our javascript console for a new one that supports 256 colours! And slightly more sane copy paste. And it works on Android, or at least it does on Lollipop. Giles recommends the Hackers keyboard. Still doesn't work on my blackberry though. For the curious, it's based on hterm. Which is a part of Chromium. And a thing called ruffus.

kokoko.fluxionary.net

konrad | Kokoko

http://kokoko.fluxionary.net/author/konrad

All posts by konrad. CyanogenMod 11 on a Samsung Galaxy Note (N7000) – Nope! It’s important to also publish negative results. So this as a memo to myself and a recommendation for others who would like to install CyanogenMod. 11 on a Samsung Galaxy Note (N7000). Don’t do it. I installed it using the nightly build. And the Google Apss. The device reacted very slowly afterward and raised often error messages. I went back and installed CM 10 using. I recently set up ownCloud. At first I set up subdomain the.

finmathblog.blogspot.com

Financial Mathematics: December 2015

http://finmathblog.blogspot.com/2015_12_01_archive.html

The miscellaneous notes of a quant. Monday, December 14, 2015. Domino dancing. A medium data research workflow with Ruffus on AWS. I don't normally blog about technology because frankly, it is too much like work. But I have been trying Domino. I use the free python library Ruffus. To create a non-blocking pipeline and handle the splitting and recombining of data files therein. I can't show you my actual computation graph as it is proprietary, so here's a stock image from ruffus instead:. The nodes on my ...