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Build lmer table -sequence input genome sequence.fas -freq output lmer.frequency. Create fasta file containing all kinds of repeats. RepeatScout -sequence input genome sequence.fas -output output repeats.fas -freq output lmer.frequency. Filter out short ( 50bp) sequences. Filter-stage-1.prl output repeats.fas output repeats.fas.filtered 1. Run RepeatMasker on your genome of interest using filtered RepeatScout library. RepeatMasker input genome sequence.fas -lib output repeats.fas.filtered 1. Mysql secure...

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Bioinfo&Med | seqbio.com Reviews
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Build lmer table -sequence input genome sequence.fas -freq output lmer.frequency. Create fasta file containing all kinds of repeats. RepeatScout -sequence input genome sequence.fas -output output repeats.fas -freq output lmer.frequency. Filter out short ( 50bp) sequences. Filter-stage-1.prl output repeats.fas output repeats.fas.filtered 1. Run RepeatMasker on your genome of interest using filtered RepeatScout library. RepeatMasker input genome sequence.fas -lib output repeats.fas.filtered 1. Mysql secure...
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1 bioinfo&med
2 repeatmasker repeatscout
3 bioinfo
4 build frequency table
5 repeatmasker
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8 biosoft
9 基因组拼接
10 转录组拼接
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Bioinfo&Med | seqbio.com Reviews

https://seqbio.com

Build lmer table -sequence input genome sequence.fas -freq output lmer.frequency. Create fasta file containing all kinds of repeats. RepeatScout -sequence input genome sequence.fas -output output repeats.fas -freq output lmer.frequency. Filter out short ( 50bp) sequences. Filter-stage-1.prl output repeats.fas output repeats.fas.filtered 1. Run RepeatMasker on your genome of interest using filtered RepeatScout library. RepeatMasker input genome sequence.fas -lib output repeats.fas.filtered 1. Mysql secure...

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Build lmer table -sequence input genome sequence.fas -freq output lmer.frequency. Create fasta file containing all kinds of repeats. RepeatScout -sequence input genome sequence.fas -output output repeats.fas -freq output lmer.frequency. Filter out short ( 50bp) sequences. Filter-stage-1.prl output repeats.fas output repeats.fas.filtered 1. Run RepeatMasker on your genome of interest using filtered RepeatScout library. RepeatMasker input genome sequence.fas -lib output repeats.fas.filtered 1. Mysql secure...

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