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The Sequence Ontology - IndexSequence Ontology - Index
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Sequence Ontology - Index
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The Sequence Ontology - Index | sequenceontology.org Reviews
https://sequenceontology.org
Sequence Ontology - Index
sequenceontology.org
The Sequence Ontology - Resources - Index
http://www.sequenceontology.org/resources/index.html
Databases Providing SO Based Annotations. 10Gen Personal Genomes Dataset. Request a New Term.
The Sequence Ontology - Site Map - Index
http://www.sequenceontology.org/site_map/index.html
Of all terms in the ontology.
The Sequence Ontology - About
http://www.sequenceontology.org/about/index.html
About the Sequence Ontology.
The Sequence Ontology - Software
http://www.sequenceontology.org/software
The Sequence Onotlogy community has developed and maintains a number of tools useful for working with Sequence Ontology data and other biomedical ontologies. The miSO Sequence Ontology browser is a vital tool for navigating, querying and utilizing the Sequence Ontology. It has an auto-completing search tool, release selector, expandable tree viewer, a fully linked term detail viewer and exporter and clickable image graph of a terms relationships with support for cross-product relationships. SOBAcl is a c...
The Sequence Ontology - Resources - GFF3
http://www.sequenceontology.org/resources/gff3.html
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CHOmine: Data Categories
https://chomine.boku.ac.at/chomine/dataCategories.do
An integrated database for Cricetulus griseus. This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window. Genome annotation for C. gricetulus. Brinkrolf et al - PubMed: 23929341. Genome annotation for C. gricetulus. Lewis et al - PubMed: 23873082. Chinese hamster ovary - K1 cell line. Genome annotation for CHO-K1 cell line. Xu et al - PubMed: 21804562. UniProt Consortium - PubMed: 17142230.
Yandell Lab - Publications
http://www.yandell-lab.org/publications/index.html
Department of Human Genetics - University of Utah. Shared Segment Analysis and Next-Generation Sequencing Implicates the Retinoic Acid Signaling Pathway in Total Anomalous Pulmonary Venous Return (TAPVR). Nash D Arrington CB Kennedy BJ Yandell M Wu W Zhang W Ware S Jorde LB Gruber PJ Yost HJ Bowles NE Bleyl SB. PLoS One. 2015 Jun 29;10(6):e0131514. Specialized insulin is used for chemical warfare by fish-hunting cone snails. Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):1743-8. Law M Childs KL Campbell MS...
SynBioMine: Data Categories
http://www.synbiomine.org/synbiomine/dataCategories.do
Data mining for Synthetic Biology. SynBioMine integrates data from a large number of sources into a single data warehouse. This page lists the data that are included in the current release. Many more data sets will be added in future releases, please contact us if there are any particular data you would like to see included. Unless otherwise specified, the following organisms are loaded for each data source below. Bacillus amyloliquefaciens DSM 7 ( taxon 692420. Bacillus atrophaeus 1942 ( taxon 720555.
Software and Utilities - GO Wiki
http://wiki.geneontology.org/index.php/Software_and_Utilities
The purpose of the Software and Utilities. Group to perform its function. In addition, the Annotation Outreach. Group and wider community need means of exploring and utilizing GO and existing annotations. This group complements all the other groups. Software and Utilities group summary. Timeline: SWUG Timeline 2010-2011. List of projects in progress: Category:SWUG Projects. Software Group 2010 Future Plans. GO database and go-perl. Reference Genome Software Prototype. For all new meetings. March 14 2007 -.
Ontologien: 2009-07-12
http://ontologien.blogspot.com/2009_07_12_archive.html
Sonntag, 12. Juli 2009. Http:/ www.geonames.org/ontology/. The GeoNames Ontology makes it possible to add geospatial semantic information to the Word Wide Web. All over 6.2 million geonames toponyms now have a unique URL with a corresponding RDF web service. Other services describe the relation between toponyms. Links zu diesem Post. CEDEX: Eine Ontologie für ökologische Daten. Http:/ www.umweltbundesamt.at/umweltschutz/oekosystem/ontolo. Links zu diesem Post. Astonomy Ontology in OWL. Http:/ archive....
ACLAME: MeGO
http://aclame.ulb.ac.be/mego
MeGO is a Gene Ontology under construction dedicated to the functions of mobile genetic elements. The terms defined in MeGO are used to annotate phage and plasmid protein families in ACLAME. Please note that some terms in the ontology are there transiently as markers or awaiting future incorporation in the sequence ontology. The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up. From this page you can:. Or the MySQL dump.
RVS — the Reference Variant Store
https://rvs.u.hpc.mssm.edu/datasources.php
Last update: September 21 2015, 15:01. Variant types and effects. Effects of observed variants. Shown are the numbers of variants that fall into a specific category of the SequenceOntology. As determined by snpEff. 2014-15 Icahn School of Medicine at Mount Sinai. Some pages require an HTML5-capable web browser.
The AnnotationSketch module
http://www.genometools.org/annotationsketch.html
Module is a versatile and efficient C-based drawing library for GFF3-compatible genomic annotations. It is included in the. Additionally, bindings to the Lua. Programming languages are provided. Consists of several classes (see Fig. 1. Which take part in three visualization. Classes involved in image creation. Interfaces are printed in italics. Phase 1: Feature selection. The GFF3 input data are parsed into a directed acyclic graph (. See Fig. 2. Hierarchy. Note that GFF3 input files. And can be run using.
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Main Page - Bio.pe
10,000 Korean Human Genome Project. Ancient East Asian Genomes. Korean page: genomekorea.kr. Retrieved from " http:/ www.sequenceomics.org/index.php/Main Page. Related Links [ Edit. This page was last modified on 26 January 2017, at 08:38. This page has been accessed 1,605,079 times. Content is available under BioLicense: the freest license.
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The Sequence Ontology - Index
GVF was used in the clinical annotation of a whole genome, for precision medicine. Integrating precision medicine in the study and clinical treatment of a severely mentally ill person. The SO development team and the Monarch Initiative. Held a collaborative workshop in Portland to align the SO and the GENO ontologies for better annotation of phenotypes. This meeting was partially funded by the Phenotype RCN. Karen Eilbeck presented a paper titled Using GVF for Clinical Annotation of Personal Genomes.
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