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Bioinformatic Tools

Laboratory of Statistical Genetics and Bioinformatics. University of Illinois at Urbana-Champaign. UIUC Center for Neuroproteomics on Cell-Cell Signaling. Laboratory of Statistical Genetics and Bioinformatics. Full functionality has not been restored due to hardware failure. A unified web-portal of neuropeptide and parental proprotein information. Prediction of neuropeptide prohormone cleavage sites. Introduction to Neuropeptide Prediction. Access Beehive - currently not available. And P30 DA 018310.

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Bioinformatic Tools | stagbeetle.animal.uiuc.edu Reviews
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Laboratory of Statistical Genetics and Bioinformatics. University of Illinois at Urbana-Champaign. UIUC Center for Neuroproteomics on Cell-Cell Signaling. Laboratory of Statistical Genetics and Bioinformatics. Full functionality has not been restored due to hardware failure. A unified web-portal of neuropeptide and parental proprotein information. Prediction of neuropeptide prohormone cleavage sites. Introduction to Neuropeptide Prediction. Access Beehive - currently not available. And P30 DA 018310.
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1 bioinformatic tools
2 pepshop
3 app pepshop
4 beehive
5 neuropred
6 other links
7 prof rodriguez zas
8 search options
9 access pepshop
10 pepshop homepage
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bioinformatic tools,pepshop,app pepshop,beehive,neuropred,other links,prof rodriguez zas,search options,access pepshop,pepshop homepage,access neuropred,neuropred homepage,neuropred input documentation,neuropred output documentation,beehive page,chicago
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Bioinformatic Tools | stagbeetle.animal.uiuc.edu Reviews

https://stagbeetle.animal.uiuc.edu

Laboratory of Statistical Genetics and Bioinformatics. University of Illinois at Urbana-Champaign. UIUC Center for Neuroproteomics on Cell-Cell Signaling. Laboratory of Statistical Genetics and Bioinformatics. Full functionality has not been restored due to hardware failure. A unified web-portal of neuropeptide and parental proprotein information. Prediction of neuropeptide prohormone cleavage sites. Introduction to Neuropeptide Prediction. Access Beehive - currently not available. And P30 DA 018310.

INTERNAL PAGES

stagbeetle.animal.uiuc.edu stagbeetle.animal.uiuc.edu
1

NeuroPred input documentation

http://stagbeetle.animal.uiuc.edu/neuropred/neuropredinput.html

A Overview of using NeuroPred. 2 Sequence Entry Errors. D Output Selection Tasks. E Model and Mass Calculations Options. 1 Simplified Options Interface. 2 Advanced Options Interface. A Overview of Using NeuroPred. This document provides a description of the outputs of NeuroPred. A description and example usage of an earlier interface to NeuroPred. Was provided by Southey et al. (2006b). That varies slightly from this version. A newer version of NeuroPred, Test 2009. And Southey et al. (2008). Button....

2

NeuroPred output documentation

http://stagbeetle.animal.uiuc.edu/neuropred/neuropredoutput.html

A Overview of NeuroPred Outputs. B Cleavage Prediction Diagram. C Predicted Cleavage Results. D Model Accuracy Statistics Output. 1 Results for Individual Sequences. 2 Results Across All Sequences. B Model Accuracy Statistics. C Area Under the ROC curve (AUC). E Obtain Mass of Predicted Peptides Output. A Overview of NeuroPred Outputs. This document provides a description of the outputs of NeuroPred. A description and example usage of an earlier interface to NeuroPred. Southey et al. (2006b). Predicted C...

3

Introduction to Neuropeptide prediction

http://stagbeetle.animal.uiuc.edu/neuropred/neuropredintro.html

Introduction to Neuropeptide prediction. Neuropeptide prediction from genetic information. Can we predict which sites are cleaved and which ones are not? We have successfully demonstrated that cleavage sites in several prohormones from a wide range of organisms, including various molluscan, insect and mammalian species, can be accurately predicted based on sequence alone. The NeuroPred. Application suite is the outcome of this research. The overarching goal of the NeuroPred. Neuropeptide Prediction at th...

4

PepShop and Neuropeptides

http://stagbeetle.animal.uiuc.edu/pepshop.html

Laboratory of Statistical Genetics and Bioinformatics. University of Illinois at Urbana-Champaign. UIUC Center for Neuroproteomics on Cell-Cell Signaling. Laboratory of Statistical Genetics and Bioinformatics. Discovery of neuropeptides is complex due to cleavage and other post-translational modifications and the dynamic range. NeuroPred. PepShop overcomes previous limitations by providing an integrated framework of database and bioinformatics. Sequence and mass spectra data from SwePep. These research p...

5

NeuroPred: Prediction of cleavage sites and mass from neuropeptide precursors

http://stagbeetle.animal.uiuc.edu/cgi-bin/neuropred.py

Prediction of cleavage sites and mass from neuropeptide precursors. Please enter sequence into the sequence submission box below. From a file named:. Note that a file takes priority over the textbox). Only predict cleavage sites. Obtain Mass of Predicted peptides. Print Probabilities of Basic Sites only. Input the length of the signal peptide. Use zero (0) for no signal peptide). Sort the output from mass calculations on. Remove any C-terminal K and R from predicted peptides?

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LINKS TO THIS WEBSITE

neuroproteomics.scs.uiuc.edu neuroproteomics.scs.uiuc.edu

Team Members

http://neuroproteomics.scs.uiuc.edu/team.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. The research team is comprised of personnel located at the University of Illinois at Urbana-Champaign and Northwestern University in Evanston, Illinois, near Chicago. Prof Jonathan V. Sweedler. Center PI, Sampling and Separation Core; Administrative Core). Dept of Chemistry and Beckman Institute. Dept of Animal Scien...

neuroproteomics.scs.uiuc.edu neuroproteomics.scs.uiuc.edu

Sampling & Separation

http://neuroproteomics.scs.uiuc.edu/sampling.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Sampling and Separation Core. Jonathan V. Sweedler, PI. Prof Jonathan V. Sweedler. Dept of Chemistry and The Beckman Institute. University of Illinois at Urbana-Champaign. What do we do? Patch Clamp Electrophysiology and Capillary Electrophoresis Mass Spectrometry Metabolomics for Single Cell Characterization. P Neme...

neuroproteomics.scs.uiuc.edu neuroproteomics.scs.uiuc.edu

Stretched Imaging

http://neuroproteomics.scs.uiuc.edu/imaging.html

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Stretched Imaging Tools for MSI. The following are computational tools for use with the stretched imaging method as found in the following two references:. MALDI Mass Spectrometric Imaging using the Stretched Sample Method to Reveal Neuropeptide Distributions in Aplysia Nervous Tissue,. 2009, 9402-9409. [PubMed].

neuroproteomics.scs.uiuc.edu neuroproteomics.scs.uiuc.edu

Administrative

http://neuroproteomics.scs.uiuc.edu/administrative.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Jonathan V. Sweedler, PI. Prof Jonathan V. Sweedler. University of Illinois at Urbana-Champaign. What do we do? Jonathan Sweedler, as the Principal Investigator of the Center, also leads the Administrative Core, which is charged with scientific review of Center research projects, and with facilitating communication b...

neuroproteomics.scs.uiuc.edu neuroproteomics.scs.uiuc.edu

Welcome

http://neuroproteomics.scs.uiuc.edu/protocols.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Click article title to download PDF. Qualitative and Quantitative Metabolomic Investigation of Single Neurons by Capillary Electrophoresis Electrospray Ionization Mass Spectrometry. P Nemes, S.S. Rubakhin, J.T. Aerts, J.V. Sweedler, Nat. Protoc. 8, 2013, 783-799. A Protease for Middle Down Proteomics. Volume provide ...

neuroproteomics.scs.illinois.edu neuroproteomics.scs.illinois.edu

Team Members

http://neuroproteomics.scs.illinois.edu/team.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. The research team is comprised of personnel located at the University of Illinois at Urbana-Champaign and Northwestern University in Evanston, Illinois, near Chicago. Prof Jonathan V. Sweedler. Center PI, Sampling and Separation Core; Administrative Core). Dept of Chemistry and Beckman Institute. Dept of Animal Scien...

neuroproteomics.scs.illinois.edu neuroproteomics.scs.illinois.edu

Facilities

http://neuroproteomics.scs.illinois.edu/facilities.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Facilities Available to the Center. The University of Illinois at Urbana-Champaign has one of the leading Chemistry Departments. In the world, as well as two interdisciplinary research institutes- the Institute for Genomic Biology. IGB) and the Beckman Institute for Advanced Science and Technolog. Tandem and Crux), o...

neuroproteomics.scs.illinois.edu neuroproteomics.scs.illinois.edu

NeuroPred

http://neuroproteomics.scs.illinois.edu/neuropred.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. NeuroPred: Tools to Predict Neuropeptides. Application for neuropeptide prediction. Go to the NeuroPred application.

neuroproteomics.scs.illinois.edu neuroproteomics.scs.illinois.edu

Collaborators

http://neuroproteomics.scs.illinois.edu/collaborators.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Our Biological Users - Current and Past. Dept of Pharmaceutical Sciences. Uppsala Universitet, Sweden. University of Illinois at Chicago. Dept of Biological and Experimental Psychology. Queen Mary University of London. Dept of Anatomy and Neurobiology. University of Maryland School of Medicine. Lakshmi A. Devi. Unive...

neuroproteomics.scs.illinois.edu neuroproteomics.scs.illinois.edu

Bioinformatics & Systems Biology

http://neuroproteomics.scs.illinois.edu/bioinformatics.htm

Neuroproteomics and Neurometabolomics Center on Cell-Cell Signaling. University of ILLINOIS at Urbana-Champaign. Molecular Profiling and Characterization. Bioinformatics and Systems Biology. Bioinformatics and Systems Biology Core. Sandra Rodriguez-Zas, PI. Dept of Animal Sciences. University of Illinois at Urbana-Champaign. What do we do? A prohormone processing and peptide predictor), PepShop. One stop integration of peptide sequence and mass spectra information) and neuroProsight. Comparing Label-free...

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Bioinformatic Tools

Laboratory of Statistical Genetics and Bioinformatics. University of Illinois at Urbana-Champaign. UIUC Center for Neuroproteomics on Cell-Cell Signaling. Laboratory of Statistical Genetics and Bioinformatics. Full functionality has not been restored due to hardware failure. A unified web-portal of neuropeptide and parental proprotein information. Prediction of neuropeptide prohormone cleavage sites. Introduction to Neuropeptide Prediction. Access Beehive - currently not available. And P30 DA 018310.

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The first stage: eggs and larvae. The next stage: pupation. Life above ground: the beetle emerges. Larva I.D. Guide. Seen a Stag Beetle? Elater Ferrugineus – the Rusty Click Beetle. Limoniscus violaceus – the Violet Click Beetle. Gnorimus Nobilis – the Noble Chafer. Gnorimus variabilis – the Variable Chafer. Trichius sp. – Bee Chafers. Cetonia aurata – the Rose Chafer. Welcome to stagbeetle.info – a site all about the Stag Beetle! Through its incredible transformation from larva to beetle.

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