sulfosite.mbc.nctu.edu.tw

SulfoSite

Is to computationally predict sulfation sites within given protein sequences. A representative set of 162 protein tyrosine sufation sites from the Swiss-Port were used to analyze characteristics and to train and test in SulfoSite. Support Vector Machine (SVM) is applied for learning to each group of sequences and accessible surface area (ASA) value surrounding to the sulfation residues. Note:SulfoSite can be easily accessed on ExPasy Proteomics Analysis Tools. GAST HUMAN: Gastrin [Precursor].

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SulfoSite | sulfosite.mbc.nctu.edu.tw Reviews

<META> DESCRIPTION

Is to computationally predict sulfation sites within given protein sequences. A representative set of 162 protein tyrosine sufation sites from the Swiss-Port were used to analyze characteristics and to train and test in SulfoSite. Support Vector Machine (SVM) is applied for learning to each group of sequences and accessible surface area (ASA) value surrounding to the sulfation residues. Note:SulfoSite can be easily accessed on ExPasy Proteomics Analysis Tools. GAST HUMAN: Gastrin [Precursor].

<META> KEYWORDS

1 introduction

2 independent test

3 download

4 older version

5 welcome to sulfosite

6 sulfosite

7 citing sulfosite

8 case study i

9 case study ii

10 tyrosine y

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SulfoSite | sulfosite.mbc.nctu.edu.tw Reviews

https://sulfosite.mbc.nctu.edu.tw

Is to computationally predict sulfation sites within given protein sequences. A representative set of 162 protein tyrosine sufation sites from the Swiss-Port were used to analyze characteristics and to train and test in SulfoSite. Support Vector Machine (SVM) is applied for learning to each group of sequences and accessible surface area (ASA) value surrounding to the sulfation residues. Note:SulfoSite can be easily accessed on ExPasy Proteomics Analysis Tools. GAST HUMAN: Gastrin [Precursor].

INTERNAL PAGES

sulfosite.mbc.nctu.edu.tw

1

Case Study I

http://sulfosite.mbc.nctu.edu.tw/case_1.php

EMBO J. 14:389-396(1995). Predicting Protein Tyrosine Sulfation Sites. Paste a single amino acid sequence or several sequences in FASTA. Format into the field below:. Submit a file (. In FASTA format directly from your local disk. Choose which kind of residues you would like to predict:. Bid Lab, Institute of Bioinformatics, National Chiao Tung University , Taiwan. Contact us: bryan@mail.nctu.edu.tw. With questions or comments. Websites: http:/ SulfoSite.mbc.nctu.edu.tw.

2

SulfoSite

http://sulfosite.mbc.nctu.edu.tw/index.php

Is to computationally predict sulfation sites within given protein sequences. A representative set of 162 protein tyrosine sufation sites from the Swiss-Port were used to analyze characteristics and to train and test in SulfoSite. Support Vector Machine (SVM) is applied for learning to each group of sequences and accessible surface area (ASA) value surrounding to the sulfation residues. Note:SulfoSite can be easily accessed on ExPasy Proteomics Analysis Tools. GAST HUMAN: Gastrin [Precursor].

3

SulfoSite

http://sulfosite.mbc.nctu.edu.tw/independent.php

11 sulfated proteins (CCKN CANFA, FMOD BOVIN, FMOD HUMAN, HIS1 HUMAN, LUM MOUSE, OMD HUMAN, PSK1 ORYSI, PSK1 ORYSJ, PSK2 ORYSI, PSK2 ORYSJ, SIAL HUMAN) contain 31 experimental sulfotyrosine sites from UniProtKB/SwissProt release 55.0, which do not be stored in UniProtKB/SwissProt release 53.0, are used as independent test in this study. Independent test can be downloaded. Three performance measures were used: Sensitivity, Specificity, and Accuracy,as defined below. Number of test set.

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tsp.biocuckoo.org

GPS-TSP 1.0 - Prediction of Tyrosine of Sulfation Sites

http://tsp.biocuckoo.org/links.php

Last update: Oct. 20th, 2014. Computational resources of Protein Sulfation :. Last updated: May 5th, 2014. We apologized that the computational studies without any web links of databases or tools will not be included in this compendium, since it's not easy for experimentalists to use studies directly. We are grateful for users feedback. Please inform Zhicheng Pan. Or Dr Jian Ren. To add, remove or update one or multiple web links below. 1 Protein Sulfation Databases.

bioinfo-dbb.nhri.org.tw

CAPIH

http://bioinfo-dbb.nhri.org.tw/capih/resource.php?search_target=resource

Human Protein Reference Database. Biomolecular Interaction Network Database. Biological General Repository for Interaction Datasets. A web server for comparative identification of species-specific and non-species-specific insertion/deletion events. KinasePhos is to computationally predict phosphorylation sites within given protein sequences. Methylation Modification Prediction Server. NetAcet 1.0 server predicts substrates of N-acetyltransferase A (NatA).

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SulfoSite

Is to computationally predict sulfation sites within given protein sequences. A representative set of 162 protein tyrosine sufation sites from the Swiss-Port were used to analyze characteristics and to train and test in SulfoSite. Support Vector Machine (SVM) is applied for learning to each group of sequences and accessible surface area (ASA) value surrounding to the sulfation residues. Note:SulfoSite can be easily accessed on ExPasy Proteomics Analysis Tools. GAST HUMAN: Gastrin [Precursor].

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