bioclipse.blogspot.com
BioclipseBlog: Web seminar on Bioclipse
http://bioclipse.blogspot.com/2011/03/web-seminar-on-bioclipse.html
A blog dedicated to Bioclipse - a workbench for life science. Web seminar on Bioclipse. Ola Spjuth of the Bioclipse project will give a web seminar on Mar 29th 16:00 GMT entitled: In-Silico Prediction of Drug Safety and Metabolites Using Bioclipse. The seminar is free of charge but requires registration. Subscribe to: Post Comments (Atom). Presenting at Society of Toxicology 2011. Web seminar on Bioclipse.
bioclipse.blogspot.com
BioclipseBlog: Bioclipse 2.0 released
http://bioclipse.blogspot.com/2009/07/biocipse-20-released.html
A blog dedicated to Bioclipse - a workbench for life science. Bioclipse 2.0 released. On behalf of all Bioclipse. A Molecules Table capable of reading large files. And a powerful backbone in cheminformatics provided by the Chemistry Development Kit (CDK). Screenshot of Bioclipse showing editing of a chemical structure using the new JChemPaint editor. Bioclipse is a Rich Client. Framework, Bioclipse delivers a state-of-the-art plugin architecture which makes it possible to extend it in any direction.
bioclipse.blogspot.com
BioclipseBlog: April 2012
http://bioclipse.blogspot.com/2012_04_01_archive.html
A blog dedicated to Bioclipse - a workbench for life science. Chemical decision support with Chemspider and ChEMBL-RDF. Is a system where users can draw or import chemical structures, execute multiple predictions or database lookups, and visually interpret results. This was previously demonstrated for chemical liability assessment. And for running OpenTox predictions. In the recent days I have implemented a module for adding a. SimilaritySearch complemented by ChEMBL lookup via the. For aiding me in this...
bioclipse.blogspot.com
BioclipseBlog: Postdoc position in predictive toxicology at Uppsala University
http://bioclipse.blogspot.com/2012/04/postdoc-position-in-predictive.html
A blog dedicated to Bioclipse - a workbench for life science. Postdoc position in predictive toxicology at Uppsala University. Postdoc position in cheminformatics, bioinformatics, or computer science - applications in predictive toxicology. We have an open postdoc position in the group of Pharmaceutical Bioinformatics at the Department of Pharmaceutical Biosciences, Uppsala University, Sweden. Deadline for application: May 9th , 2012. Subscribe to: Post Comments (Atom).
bioclipse.net
InChI OSGI bundles | Bioclipse
http://bioclipse.net/inchi-osgi
IUPAC Chemical Identifier (InChI). Is such a standardized identifier for chemical structures. The Bioclipse project maintains OSGi. Bundles for InChI, making it easily available in any software application supporting the OSGi module system. It wraps the jni-inchi. In OSGi bundles and publishes them on a p2 site. The P2 site for the jni-inchi OSGi bundels is: http:/ pele.farmbio.uu.se/bioclipse/jni-inchi/. Chem-bla-ics : Comparing sets of identifiers: the Bioclipse implementation. InChI OSGI bundles (Page).
bioclipse.net
Ola Spjuth | Bioclipse
http://bioclipse.net/users/ola-spjuth
6 years 37 weeks. Chem-bla-ics : Comparing sets of identifiers: the Bioclipse implementation. MetaPrint2D in Bioclipse (Page). Decision Support introductory screencast (Screencast). Bioclipse 2.6 released (News article). InChI OSGI bundles (Page).
bioclipse.net
Bioclipse 2.6 released | Bioclipse
http://bioclipse.net/news/bioclipse-26-released
Bioclipse 2.6 released. Published by Ola Spjuth. Sat, 2012-12-22 23:27. The Bioclipse team is proud to announce the release of. Version 2.6. The release contains new. Models (such as for. With e.g. improved aromaticity detection, and. Improved core stability based on Eclipse 3.8 and support for Java 1.7, new installation processes for Windows and Mac OS X, and numerous bug fixes. Bioclipse 2.6 is available for Mac OS X, Linux, and Windows and can be downloaded from Sourceforge. A getting started guide.
bioclipse.net
Download | Bioclipse
http://bioclipse.net/download
Bioclipse is programmed by volunteers and does not receive any direct support, from neither governments nor companies. Still we have high costs in the development and maintenance of Bioclipse. Please therefore consider donating to Bioclipse. Any sum, whether small or large, is highly appreciated. Donate to Bioclipse via PayPal. Most donations are between 10-100 Euros). Chem-bla-ics : Comparing sets of identifiers: the Bioclipse implementation. MetaPrint2D in Bioclipse (Page). InChI OSGI bundles (Page).
bioclipse.net
Bioclipse-QSAR | Bioclipse
http://www.bioclipse.net/bioclipse-qsar
Published by Ola Spjuth. Fri, 2010-03-19 13:59. Go to Git repo. The QSAR feature turns Bioclipse into a fully-fledge workbench for Quantitative Structure-Activity Relationship (QSAR). It builds on the novel standard and exchange format QSAR-ML. And there are several implementations of descriptor providers, for example CDK (local, REST, XMPP) and JoeLib (local). If you use Bioclipse-QSAR or QSAR-ML in your scientific projects, please cite:. The development page for Bioclipse-QSAR. On the Bioclipse Wiki.
bioclipse.net
Bioclipse Features | Bioclipse
http://www.bioclipse.net/bioclipse-features
Bioclipse is a rich client, which means it is a downloadable application that run on your local computer but also gives the possibility to communicate with servers for data retrieval and computational services. The powerful plugin architecture is based on Eclipse, and results in a responsive, integrated user interface designed for simple and intuitive operations that at the same time is easy to extend with custom functionality. Some examples of functionality is listed below. Bioclipse has advanced tools ...
