ZDOCK 3.0.2. ZDOCK 3.0.2f. ZDOCK 2.3.2. ZDOCK 2.3.2f. Example 1: Xylanase/Xylanase Inhibitor. Example 2: Antibody 13B5/HIV Capsid p24. Average recent wait time: 00:08:39 (HH:MM:SS).
http://zdock.umassmed.edu/
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ZDOCK Server: An automatic protein docking server | zdock.umassmed.edu Reviews
https://zdock.umassmed.edu
ZDOCK 3.0.2. ZDOCK 3.0.2f. ZDOCK 2.3.2. ZDOCK 2.3.2f. Example 1: Xylanase/Xylanase Inhibitor. Example 2: Antibody 13B5/HIV Capsid p24. Average recent wait time: 00:08:39 (HH:MM:SS).
zdock.umassmed.edu
ZDOCK Server: References
http://zdock.umassmed.edu/references.html
If you use the ZDOCK server in your work, please cite:. Pierce BG, Wiehe K, Hwang H, Kim BH, Vreven T, Weng Z. (2014) ZDOCK Server: Interactive Docking Prediction of Protein-Protein Complexes and Symmetric Multimers. ZDOCK 3.0.2/2.3.2. Pierce BG, Hourai Y, Weng Z. (2011) Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library. PLoS One 6(9): e24657. Pierce B, Tong W, Weng Z. (2005) M-ZDOCK: A Grid-based Approach for C. ZDOCK 3.0/3.0.2 Scoring Function.
ZDOCK Server: An automatic protein docking server
http://zdock.umassmed.edu/m-zdock
M-ZDOCK: Symmetric Multimer Docking. Example: Phospholipase A2 (Trimer). Average recent wait time: 00:24:17 (HH:MM:SS).
ZDOCK Server: Job 49836 Results
http://zdock.umassmed.edu/results/example_zdock_2B42
The receptor is shown in gray. Models 1-5 are the top 5 modeled ligand positions from ZDOCK. Top 500 gives the ligand center of mass positions for the top 500 ZDOCK models. Generate Sets of Predicted Structures. ZDOCK version: ZD3.0.2. Input receptor: 2dcy 1. Input ligand: 1t6e 2.
ZDOCK Server: Help
http://zdock.umassmed.edu/help.html
Jump to a topic:. ZDOCK and M-ZDOCK are Fast Fourier Transform based protein docking programs authored and maintained by Zhiping Weng's lab (ZLAB). At the University of Massachusetts Medical School. ZDOCK searches all possible binding modes in the translational and rotational space between the two proteins and evaluates each pose using an energy-based scoring function. M-ZDOCK is an adaptation of ZDOCK to predict the structures of cyclically symmetric multimers, based on the structure of a protein. After...
ZDOCK Server: Tools and Links
http://zdock.umassmed.edu/tools.html
Generate predictions from a ZDOCK output file. Generate predictions from an M-ZDOCK output file. View predictions from a ZDOCK output file. The following servers and programs accept ZDOCK output files, but be sure to specify the older ZDOCK output format when submitting a job (ZDOCK 3.0.2F or 2.3.2F). Flexible refinement of protein docking predictions. A server to filter, cluster, and rank docking predictions. currently offline. Prune initial-stage docking predictions.
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CBTD
http://cbtd.ams.cmu.ac.th/k_link.html
This resource predicts the near-native structure of ankyrin-target complex. It is a tool for rapidly optimization a process by moving through factor space via a relatively simple geometric algorithm. OMICtools is a workflow for genomic, transcriptomic, proteomic, and metabolomic data analysis. This resource contains 3D structures of proteins, nucleic acids and complexes. It finds similarity region of query sequence to protein/nucleotide sequence database. It services for searching 3D template.
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ZDOCK Server: An automatic protein docking server
ZDOCK 3.0.2. ZDOCK 3.0.2f. ZDOCK 2.3.2. ZDOCK 2.3.2f. Example 1: Xylanase/Xylanase Inhibitor. Example 2: Antibody 13B5/HIV Capsid p24. Average recent wait time: 00:08:39 (HH:MM:SS).
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