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3d-blast.life.nctu.edu.tw

3D-BLAST Protein Structure Search

3D-BLAST Protein Structure Search. Input a protein structure as a query to discover its homologous proteins and evolutionary classifications. To obtain more information on that specific field. The standalone 3D-BLAST program. Is avaliable now. Please see Download page. SCOP 1.75 (all). SCOP 1.75 (95%). SCOP 1.75 (40%). Maximum number of hit structures. Vol 8, pp. R31.1 R31.16, 2007. J-M Yang and C.-H. Tung " Protein structure database search and evolutionary classification. Vol 34, pp. 3646-3659, 2006.

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3D-BLAST Protein Structure Search | 3d-blast.life.nctu.edu.tw Reviews
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3D-BLAST Protein Structure Search. Input a protein structure as a query to discover its homologous proteins and evolutionary classifications. To obtain more information on that specific field. The standalone 3D-BLAST program. Is avaliable now. Please see Download page. SCOP 1.75 (all). SCOP 1.75 (95%). SCOP 1.75 (40%). Maximum number of hit structures. Vol 8, pp. R31.1 R31.16, 2007. J-M Yang and C.-H. Tung Protein structure database search and evolutionary classification. Vol 34, pp. 3646-3659, 2006.
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3D-BLAST Protein Structure Search | 3d-blast.life.nctu.edu.tw Reviews

https://3d-blast.life.nctu.edu.tw

3D-BLAST Protein Structure Search. Input a protein structure as a query to discover its homologous proteins and evolutionary classifications. To obtain more information on that specific field. The standalone 3D-BLAST program. Is avaliable now. Please see Download page. SCOP 1.75 (all). SCOP 1.75 (95%). SCOP 1.75 (40%). Maximum number of hit structures. Vol 8, pp. R31.1 R31.16, 2007. J-M Yang and C.-H. Tung " Protein structure database search and evolutionary classification. Vol 34, pp. 3646-3659, 2006.

INTERNAL PAGES

3d-blast.life.nctu.edu.tw 3d-blast.life.nctu.edu.tw
1

3D-BLAST Protein Structure Search

http://3d-blast.life.nctu.edu.tw/dbsas.php

3D-BLAST Protein Structure Search. Input a protein structure as a query to discover its homologous proteins and evolutionary classifications. To obtain more information on that specific field. The standalone 3D-BLAST program. Is avaliable now. Please see Download page. SCOP 1.75 (all). SCOP 1.75 (95%). SCOP 1.75 (40%). Maximum number of hit structures. Vol 8, pp. R31.1 R31.16, 2007. J-M Yang and C.-H. Tung " Protein structure database search and evolutionary classification. Vol 34, pp. 3646-3659, 2006.

2

3D-BLAST Visitor tracking

http://3d-blast.life.nctu.edu.tw/tracking.php

Log of 30 days. Log of countries (past 30 days). Log of this year. Log of last year.

3

3D-BLAST Substitution matrix

http://3d-blast.life.nctu.edu.tw/sm.php

Turn that that allow the peptide backbone to fold back and bear great significance in protein structure and function. This value is 11. In total, most of these segments (95.25%) in W are the b. Structural alphabets substitution matrix (SASM) of 3D-BLAST. The scores are high if similar alphabets are aligned, e.g., helix alphabets (A, Y, B, C, and D) are aligned to helix alphabets. In contrast, the scores are low when helix alphabets are aligned to strand alphabets.

4

3D-BLAST E-value

http://3d-blast.life.nctu.edu.tw/evalue.php

5

3D-BLAST Download

http://3d-blast.life.nctu.edu.tw/download.php

You download the package from:. Standalone 3d-blast Linux beta102.tar.gz. Standalone 3d-blast Mac beta102.tar.gz. Standalone 3d-blast Mac beta102 Lion.tar.gz. After downloading the package to you Linux-based computer, uncompress it by following commands in terminal. Gunzip Standalone 3d-blast Linux beta102.tar.gz. Tar -xpf Standalone 3d-blast Linux beta102.tar. And then, you may check the file " README. Structural Alphabet Sequence Database (SADB). According to the k. With Structural alphabet sequences.

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LINKS TO THIS WEBSITE

gemdock.life.nctu.edu.tw gemdock.life.nctu.edu.tw

BioXGEM

http://gemdock.life.nctu.edu.tw//bioxgem/publish/publish.php

Name: Yang, Jinn-Moon (Professor and Director). Chiao Tung University/ Institute of Bioinformatics. In the last five years (from 2003 2008), we published 22 SCI papers, 1 non-SCI paper (PLoS ONE),. And 9 conference papers. Among these 22 SCI papers, the impact factor of five papers, which I am the corresponding author, exceeds 6.0 ( Figure 1A. My h-index is 9 since 2000. Journal Papers (* corresponding author). J-W Huang, C.-C. King, J.-M. Yang*. In press. ( IF: 3.493. Vol 8, pp. 4268-4276, 2008. Y-W Ju,...

tbi.tw tbi.tw

::TBI Core Facility::

http://www.tbi.tw/tools/index.htm

BLAST Search at NCKU. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. This is a customized BLAST tool supported by NCKU bioinformatics center. BLAST against PDB protein databank at NTHU. BLAST against Motif/Domain database at NTHU. Search your protein or DNA sequence against Motif/Domain database. BLAST against customized database (the databases built by yourself). Software for two-channel cell-based RNAi data [NHRI]. Deep-sequencing small RNA analysis p...

gemdock.life.nctu.edu.tw gemdock.life.nctu.edu.tw

fastSCOP: Evolutionary classification

http://gemdock.life.nctu.edu.tw/fastSCOP

Protein structure evolutionary classifications. Input a protein structure as a query to assign the SCOP domains and evolutionary classifications. To obtain more information on that specific field. The search database now is updated to SCOP 1.75. C-H Tung and J.-M. Yang " fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies. Vol 35(Web Server issue), pp. W438-W443, 2007. Last updated 2011/04/23 by J.-M. Yang.

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3d-blast.life.nctu.edu.tw 3d-blast.life.nctu.edu.tw

3D-BLAST Protein Structure Search

3D-BLAST Protein Structure Search. Input a protein structure as a query to discover its homologous proteins and evolutionary classifications. To obtain more information on that specific field. The standalone 3D-BLAST program. Is avaliable now. Please see Download page. SCOP 1.75 (all). SCOP 1.75 (95%). SCOP 1.75 (40%). Maximum number of hit structures. Vol 8, pp. R31.1 R31.16, 2007. J-M Yang and C.-H. Tung " Protein structure database search and evolutionary classification. Vol 34, pp. 3646-3659, 2006.

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