iimcb.genesilico.pl
SpliProt3D - database of structures (and models) of proteins of the human spliceosome
http://iimcb.genesilico.pl/SpliProt3D/home
SpliProt3D is an online database of representative experimentally determined and computationally predicted structures of proteins of the human spliceosome. Features of protein regions in the SpliProt3D database. Features of models in the SpliProt3D database. How to cite SpliProt3D database? We carried out a systematic, comprehensive structural bioinformatics analysis of the human spliceosomal proteome. We predicted ordered and disordered regions, established a non-redundant set of experimental models...
csbg.cnb.csic.es
Florencio Pazos. Xdet - MTreedet
http://csbg.cnb.csic.es/pazos/Xdet
Implements two methods for detecting residues responsible for functional especificity in multiple sequence alignments. These kind of positions, presenting a family-dependent (or function-dependent) conservation pattern, complement the fully-conserved positions as predictors of functionality. They are usually related to functional specificity. The first method is the "mutational behaviour (MB) method", previously implemented in the MTreedet. Is freely available for academic users. Other users, please ...
iupred.enzim.hu
IUPred
http://iupred.enzim.hu/Theory.php
Prediction of Intrinsically Unstructured Proteins. Short description of our method. 11628-11633). We aimed to estimate the pairwise energy without a presumed structure, from the amino acid composition only. The parameters of the energy predictor matrix were determined by least squares fitting in a way to obtain the best fit between the energy calculated from the known structures and the energy estimated from the amino acid compositions for all proteins in the dataset overall. J Mol Biol. (2005) 347.
iupred.enzim.hu
IUPred
http://iupred.enzim.hu/Downloads.php
Prediction of Intrinsically Unstructured Proteins. To download IUPred fill out the form below. The program package will be sent to the email address you provide. Please note that this automated service is only available to academic users. Commercial users please send an enquiry to the following e-mail address:. All fields are mandatory. I have read and I accept the license agreement. I am an academic user. Zsuzsanna Dosztányi, Veronika Csizmók, Péter Tompa and István Simon. J Mol Biol. (2005) 347.
mabit.ttk.mta.hu
.:HSB:.
http://www.mabit.ttk.mta.hu/doc/hu/society/resources/server
Magyarországi bioinformatikusok által fejlesztett és karbantartott szerverek. Anchor: Fehérje kötő helyek becslése a rendezetlen fehérjékben. Az ANCHOR szerver segítségével azokat a kötő régiókat becsülhetjük meg, amelyek önmagukban rendezetlenek, de a szerkezettel rendelkező partnerhez való kötődés során rendezetlen-rendezett átmeneten mennek keresztül. Az eljárás energia becslésen alapul, és az aminosav szekvenciákat használja inputként. Dosztányi Zsuzsa (dosztanyi kukac caesar pont elte pont hu).
bioinformatics.oxfordjournals.org
ANCHOR: web server for predicting protein binding regions in disordered proteins
http://bioinformatics.oxfordjournals.org/content/25/20/2745.full
View Current Issue (Volume 32 Issue 16 August 15, 2016). ANCHOR: web server for predicting protein binding regions in disordered proteins. Institute of Enzymology, Biological Research Center, Hungarian Academy of Sciences, PO Box 7, H-1518 Budapest, Hungary. To whom correspondence should be addressed. June 25, 2009. August 7, 2009. August 23, 2009. The web server is available at http:/ anchor.enzim.hu. The program package is freely available for academic users. Such regions exist as a highly flexible str...
iupred.enzim.hu
IUPred
http://iupred.enzim.hu/Help.php
Prediction of Intrinsically Unstructured Proteins. You can specify the title of your request here. This is optional. There are two ways to input a protein sequence:. If the protein is deposited in the UniProt database (either in SwissProt or TrEMBL) you can specify the accession code or the ID of the protein in the "Enter SWISS-PROT/TrEMBL identifier or accession number". Type or cut and paste your sequence in the "paste the amino acid sequence". It uses a parameter set suited for predicting short, proba...
iupred.enzim.hu
IUPred
http://iupred.enzim.hu/IUP_links.php
Prediction of Intrinsically Unstructured Proteins. Servers for the prediction of protein disorder, unstructured regions. POODLE-L, POODLE-S, POODLE-W, POODLE-I. NORSp, UCON, MD. DisProt VL3, VL3H, VL3E. DisProt - Database of Protein Disorder. Dosztányi Z, Mészáros B, Simon I. Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins. Brief Bioinform. 2010; 11:225-243. He B, Wang K, Liu Y, Xue B, Uversky VN, Dunker AK. Predicting intrinsic disorder in proteins: an overview.
