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Bioinfomagician | Daily finding in bioinformatic analysis for proteomic/genomic research | bioinfomagician.wordpress.com Reviews
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Daily finding in bioinformatic analysis for proteomic/genomic research
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December | 2014 | Bioinfomagician
https://bioinfomagician.wordpress.com/2014/12
Daily finding in bioinformatic analysis for proteomic/genomic research. About Me and This Blog. December 29, 2014. Genomics data are so abundant nowadays. The chances are someone has conducted similar experiments to yours. In fact, we should research hard before even thinking about running new samples because the last thing you want to know is that someone has published the data before you did. What is bigWig file? On UCSC website it says following “The bigWig. BigWig files are indexed binary files which...
My favorite commands Part3: ‘sweep’ function in R | Bioinfomagician
https://bioinfomagician.wordpress.com/2014/08/12/my-favorite-commands-part3-sweep-function-in-r
Daily finding in bioinformatic analysis for proteomic/genomic research. About Me and This Blog. August 12, 2014. My favorite commands Part3: ‘sweep’ function in R. In the last two posts, I described useful commands either to expand or reduce your data. In R, “apply” function is used to apply a function you specify to the data frame. For example, you can use “mean” function to calculate mean values for each column and row. Myfunc -function(x){ t=1 for (i in x){t=t*i} return(t) }. Sweep function in R.
My favorite commands Part2: Data reduction using ddply | Bioinfomagician
https://bioinfomagician.wordpress.com/2014/07/27/my-favorite-commands-part2-data-reduction-using-ddply
Daily finding in bioinformatic analysis for proteomic/genomic research. About Me and This Blog. July 27, 2014. My favorite commands Part2: Data reduction using ddply. You see that first column entrez ID is an identifier which appears multiple times in the data. The data were sorted, but it doesn’t have to be. The goal of simple task is to create a new data frame with ID, average of length (2nd column) and GC content (3rd column). How do you accomplish this task? The help page of ddply command shows.
My favorite commands Part1: Split and copy using AWK | Bioinfomagician
https://bioinfomagician.wordpress.com/2014/07/18/my-favorite-commands-part1-split-and-copy-using-awk
Daily finding in bioinformatic analysis for proteomic/genomic research. About Me and This Blog. July 18, 2014. My favorite commands Part1: Split and copy using AWK. I haven’t updated my blog for while…… I have been pretty busy since the beginning of 2014 but that was my excuse, shame on me. Some people told me my blog is useful and that gave me motivation to update. Let’s do it! Do you see what I want to accomplish? Colored parts are identical, notice that Entrez ID column has only single entry now. ...
Bioinformatics tools for VCF files | Bioinfomagician
https://bioinfomagician.wordpress.com/2015/04/21/bioinformatics-tools-for-vcf-files
Daily finding in bioinformatic analysis for proteomic/genomic research. About Me and This Blog. April 21, 2015. Bioinformatics tools for VCF files. Have become well accepted formats to some extent. I say well accepted because a few versions ago CLCbio still reported variants in a csv file format, but maybe I shouldn’t digress. Bioinformatic Scientist @ UCLA. View all posts by bioinfomagician ». Laquo; Previous post. Leave a Reply Cancel reply. Enter your comment here. Address never made public). Notify m...
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Blog | The Geschwind Lab
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Skip to main content. Links to some of the Geschwind lab's favorite blogs! August 31, 2013. Bioinformatics from an in-house expert: http:/ bioinfomagician.wordpress.com.
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UCSC Genome Browser Home
About the UCSC Genome Bioinformatics Site. Welcome to the UCSC Genome Browser website. This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to the ENCODE. We encourage you to explore these sequences with our tools. The Genome Browser. Zooms and scrolls over chromosomes, showing the work of annotators worldwide. The Gene Sorter. Quickly maps your sequence to the genome. The Table Browser. We are pleased to announce new functiona...
Bioinformatics learning
A forum for discussion on learning bioinformatics tools. Sunday, January 21, 2007. Although I finished the project a long time ago I have written a short report for uploading here on the page. It is build on my synopsis and powerpoint show and therefore is a bit untraditional as report. You can find it here. Posted by Sine Zambach @ 11:33 AM. Monday, June 19, 2006. Eccept from those who worked with IT as proffession. Posted by Sine Zambach @ 12:46 PM. Monday, May 08, 2006. Volounteers for the interviews ...
Bioinforli's Blog | Bioinformatics stuff
Skip to primary content. Skip to secondary content. Apologies, but no results were found for the requested archive. Perhaps searching will help find a related post. Error: Twitter did not respond. Please wait a few minutes and refresh this page. Create a free website or blog at WordPress.com.
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Bioinfomagician | Daily finding in bioinformatic analysis for proteomic/genomic research
Daily finding in bioinformatic analysis for proteomic/genomic research. About Me and This Blog. April 21, 2015. Bioinformatics tools for VCF files. Have become well accepted formats to some extent. I say well accepted because a few versions ago CLCbio still reported variants in a csv file format, but maybe I shouldn’t digress. December 29, 2014. Genomics data are so abundant nowadays. The chances are someone has conducted similar experiments to yours. In fact, we should research hard before even ...So yo...
BioInfoMania | Next generation sequencing gone mad
Next generation sequencing gone mad. Be careful what you ask for. This recent post on seqanswers.com. Q Where can I find the 3’UTR sequences of all the genes of the human? A At the end of the genes, after the stop codon. January 19, 2011 – 3:15 pm. With this blog I aim to record useful, funny, and irrelevant tidbits from my job as a bioinformatician. I hope it benefits someone out there. January 19, 2011 – 3:11 pm. Pathogens: Genes and Genomes. What You're Doing Is Rather Desperate.
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Master en Bioinformatique et Modélisation (Français). Master in Bioinformatics and Modelling (English).
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Getting your own Genome. Possible genomic diseases of you. Storing your genome in you PC. Viewing your genetics family. A brief guide to genomics from NHGRI. Interesting things in your Genome. Compare your genome with other people's. The principle of universal genome. Fully sequenced human genomes. Fully sequenced female human genome. Human Y chromosome genomics. Genomics Major Paper Publication. Your writing contribution to Genomics. Daphnia Genomics Consortium (DGC). Rice Genome at BGI China. By Nation...
