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Friday, 24 April 2015. Few things fill the hearts of molecular biologists with as much dread as embarking on a GenBank submission. We all benefit from GenBank, but getting our data up there can be a somewhat onerous process. I am sure that if this community-minded attitude were not insisted upon by journals, GenBank would be a rather empty place. Proper Planning and Preparation Prevents Piss Poor Performance. You submit your manuscript. This is because:. If you are worried about being scooped, you always...

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Boops boops | boopsboops.blogspot.com Reviews

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Friday, 24 April 2015. Few things fill the hearts of molecular biologists with as much dread as embarking on a GenBank submission. We all benefit from GenBank, but getting our data up there can be a somewhat onerous process. I am sure that if this community-minded attitude were not insisted upon by journals, GenBank would be a rather empty place. Proper Planning and Preparation Prevents Piss Poor Performance. You submit your manuscript. This is because:. If you are worried about being scooped, you always...

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2 submitting to genbank

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8 source modifiers

9 here's the result

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Boops boops | boopsboops.blogspot.com Reviews

https://boopsboops.blogspot.com

Friday, 24 April 2015. Few things fill the hearts of molecular biologists with as much dread as embarking on a GenBank submission. We all benefit from GenBank, but getting our data up there can be a somewhat onerous process. I am sure that if this community-minded attitude were not insisted upon by journals, GenBank would be a rather empty place. Proper Planning and Preparation Prevents Piss Poor Performance. You submit your manuscript. This is because:. If you are worried about being scooped, you always...

INTERNAL PAGES

boopsboops.blogspot.com

1

Boops boops: Making figures for scientific papers

http://boopsboops.blogspot.com/2014/02/making-figures-for-scientific-papers.html

Wednesday, 5 February 2014. Making figures for scientific papers. What I won't be covering today though, is how to design good figures in the first place. There's enough information on that out there already. See, for example, the paper " A brief guide to designing effective figures for the scientific paper. Fig 1 Difference between raster and vector graphics. So, what programs do we use to create/edit our figures? The sort of equivalent of Microsoft Excel), for editing raster images I use Gimp. Editable...

2

Boops boops: May 2011

http://boopsboops.blogspot.com/2011_05_01_archive.html

Monday, 16 May 2011. Dealing with large R plots. Had a small problem today. I was preparing several plots for a manuscript, but there was a lot of number crunching involved. One plot in particular comprised over 1.5 million data points! I could have gone down the low-quality raster route (e.g. as a .png) to reduce file size, but didn't really want to due to the crappy, pixelated appearance of the text. It's so much easier this way). I adopted a similar approach here. Using the ggplot2. Next, I simply imp...

3

Boops boops: Self publishing "failed" thesis chapters on Figshare

http://boopsboops.blogspot.com/2012/09/self-publishing-failed-thesis-chapters.html

Friday, 28 September 2012. Self publishing "failed" thesis chapters on Figshare. Sometimes in life, things just don't work out, and this is especially the case when doing scientific research. Experiments fail, you ran out of time/money, you didn't collect as much data as you wanted, you get a boring negative result, the conclusions are littered with caveats, or maybe the idea was just a duff one in the first place? Perhaps not. The Web site Figshare. Catfish. Image used with permission (Mike Norén).

4

Boops boops: Non-zero exit status

http://boopsboops.blogspot.com/2012/11/non-zero-exit-status.html

Sunday, 11 November 2012. I have been recently attempting to install and update some new R packages on my Ubuntu 12.10 machine, namely " rfishbase. Unfortunately I got the fairly opaque error message: "installation of package had non-zero exit status". After a bit of hunting I realised I was missing some development files from the Ubuntu install that are used to compile the package code. After installing these with the following commands, the packages installed in R no problem. Rupert A. Collins.

5

Boops boops: July 2011

http://boopsboops.blogspot.com/2011_07_01_archive.html

Wednesday, 27 July 2011. Batch extracting GenBank data from journal articles. Repeatability, one of the central tenets of science. In theory, any published study should be repeatable. But, if anyone actually wants to do this, it's not always as straightforward as it sounds. Molecular people do have it easy in comparison to say ecologists—we use GenBank. The Web based repository of all things DNA. Simple, just want to re-analyse some data, grab it from GenBank. Not so easy*, and here's an example. Functio...

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rupertcollins.net

Rupert A. Collins

http://www.rupertcollins.net/index.html

Rupert A. Collins. Research and scientific interests. My primary research interest is with understanding patterns in local and global biodiversity, particularly for freshwater fishes, and always with a strong computational element. Here is a brief summary of some of my broader research interests:. Phylogenetic hypothesis testing using multilocus and genomic datasets. Investigating temporal patterns in diversification using molecular dating. Speciation and adaptive traits.

rupertcollins.net

Rupert A. Collins

http://www.rupertcollins.net/publications.html

Rupert A. Collins. Publications (see also Google Scholar profile. Hrbek T. (2015). An. Comparison of reduced-representation and sequence-capture protocols for phylogenomics. Britz R., Rüber L. (2015). Phylogenetic systematics of leaffishes (Teleostei: Polycentridae, Nandidae). Journal of Zoological Systematics and Evolutionary Research. Doi: 10.1111/jzs.12103. Doi: 10.3897/BDJ.3.e4162. Cruickshank R.H. (2013). The seven deadly sins of DNA barcoding. Doi: 10.1111/1755-0998.12046. Boyer S., Malumbres-O...

rupertcollins.net

Rupert A. Collins

http://www.rupertcollins.net/cv.html

Rupert A. Collins. Full CV available on request. Post-doctoral fellowship (CNPq funded). Laboratório de Evolução e Genética Animal. Universidade Federal do Amazonas, Brazil. Identification of ornamental fishes for biosecurity. Lincoln University, New Zealand. Supervisors: Karen F. Armstrong and Robert H. Cruickshank. Distinction): Taxonomy and Biodiversity. Imperial College and the Natural History Museum, London, United Kingdom. Supervisors: Lukas Rüber and Ralf Britz. Self-employed, United Kingdom.

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Boops boops

Friday, 24 April 2015. Few things fill the hearts of molecular biologists with as much dread as embarking on a GenBank submission. We all benefit from GenBank, but getting our data up there can be a somewhat onerous process. I am sure that if this community-minded attitude were not insisted upon by journals, GenBank would be a rather empty place. Proper Planning and Preparation Prevents Piss Poor Performance. You submit your manuscript. This is because:. If you are worried about being scooped, you always...

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