catanalyst.disi.unitn.it

CatANalyst - Sequence-based Catalytic Residue Predictor

CatANalyst is a web service for predicting catalytic residues. Starting from a protein primary structure, CatANalyst combines several features into a single residue representation. Among the features extracted, there are conservation profiles, name and type of the residue. Based on this residue representation, a Support Vector Machine that has been trained on thousands of catalytic and non-catalytic residue examples is queried to predict if the residues in the input sequence are catalytic.

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CatANalyst - Sequence-based Catalytic Residue Predictor | catanalyst.disi.unitn.it Reviews

<META> DESCRIPTION

CatANalyst is a web service for predicting catalytic residues. Starting from a protein primary structure, CatANalyst combines several features into a single residue representation. Among the features extracted, there are conservation profiles, name and type of the residue. Based on this residue representation, a Support Vector Machine that has been trained on thousands of catalytic and non-catalytic residue examples is queried to predict if the residues in the input sequence are catalytic.

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4 disi.unitn.it

5 unitn

6 University of Trento

7 prediction

8 predictor

9 machine learning

10 data mining

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CatANalyst - Sequence-based Catalytic Residue Predictor | catanalyst.disi.unitn.it Reviews

https://catanalyst.disi.unitn.it

CatANalyst is a web service for predicting catalytic residues. Starting from a protein primary structure, CatANalyst combines several features into a single residue representation. Among the features extracted, there are conservation profiles, name and type of the residue. Based on this residue representation, a Support Vector Machine that has been trained on thousands of catalytic and non-catalytic residue examples is queried to predict if the residues in the input sequence are catalytic.

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catanalyst.disi.unitn.it

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CatANalyst - Catalytic residue predictor

http://catanalyst.disi.unitn.it/sequence

The CatANalyst server is under scheduled maintenance at the moment. Please be patient and try again later.

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CatANalyst - Catalytic residue predictor

http://catanalyst.disi.unitn.it/structure

The CatANalyst server is under scheduled maintenance at the moment. Please be patient and try again later.

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CatANalyst - References

http://catanalyst.disi.unitn.it/publications

How to cite CatANalyst. Automatic prediction of catalytic residues by modeling residue structural neighborhood. BMC Bioinformatics, Volume 11, Number 1, pp. 115, March 2010.

4

CatANalyst - Help

http://catanalyst.disi.unitn.it/help

Based on this residue representation, a Support Vector Machine that has been trained on thousands of catalytic and non-catalytic residue examples is queried to predict if the residues in the input sequence are catalytic. CatANalyst outputs the protein sequence by rendering the residues with different colour temperatures and sizes, reflecting how likely they are to be catalytic. Prediction from the sequence. You can bookmark the page and check the results later when they become available. Alternativel...

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