cath.biochem.ucl.ac.uk

CATH: Protein Structure Classification Database at UCL

By ID / keywords. 26 million protein domains classified into 2,738 superfamilies. Take the Tour ». CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. Search CATH by text, ID or keyword. Search CATH by protein sequence (FASTA). Search CATH by PDB structure. CATH v4.0 based on PDB dated March 26, 2013. Gene3D v12 released March 18, 2012.

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CATH: Protein Structure Classification Database at UCL | cath.biochem.ucl.ac.uk Reviews

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By ID / keywords. 26 million protein domains classified into 2,738 superfamilies. Take the Tour ». CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. Search CATH by text, ID or keyword. Search CATH by protein sequence (FASTA). Search CATH by PDB structure. CATH v4.0 based on PDB dated March 26, 2013. Gene3D v12 released March 18, 2012.

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CATH: Protein Structure Classification Database at UCL | cath.biochem.ucl.ac.uk Reviews

https://cath.biochem.ucl.ac.uk

By ID / keywords. 26 million protein domains classified into 2,738 superfamilies. Take the Tour ». CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. Search CATH by text, ID or keyword. Search CATH by protein sequence (FASTA). Search CATH by PDB structure. CATH v4.0 based on PDB dated March 26, 2013. Gene3D v12 released March 18, 2012.

INTERNAL PAGES

cath.biochem.ucl.ac.uk

1

CATH Superfamily 3.40.50.620

http://cath.biochem.ucl.ac.uk/version/latest/superfamily/3.40.50.620/funfam/52780/alignment

CATH Superfamily 3.40.50.620. Superfamily 3.40.50.620. Overview of the Structural Clusters (SC) and Functional Families (FF) within this CATH Superfamily. Laquo; Back to all FunFams. FunFam 52780: DNA photolyase. Representative CATH Domain 1np7B01. Sequence alignment 200 sequences. More information on the open source software used on this web site can be found in the Tools. CATH: Protein Structure Classification Database. By I Sillitoe, N. Dawson, T. Lewis, D. Lee, J. Lees, C. Orengo.

2

CATH

http://cath.biochem.ucl.ac.uk/support

Forum / Mailing List. Listening to feedback has played a huge part in helping us shape the CATH resource over the years. Please do get in touch and let us know how we're doing: what we've done right, where we've gone wrong or what you would like to see added or improved. Follow us on Twitter at @CATHDatabase. To get the latest updates from the Orengo group. Check out the latest blog posts. From the Orengo group. If you need to contact us via post, our address is:.

3

CATH Domain 1cukA01

http://cath.biochem.ucl.ac.uk/version/latest/domain/1cukA01

Superfamily 2.40.50.140. OB fold (Dihydrolipoamide Acetyltransferase, E2P). Holliday junction DNA helicase RuvA. Based on mapping to UniProt P0A809. Endonucleolytic cleavage at a junction such as a reciprocal single- stranded crossover between two homologous DNA duplexes (Holliday junction). The enzyme from Saccharomyces cerevisiae has no endonuclease or exonuclease activity on single-stranded or double-stranded DNA molecules that do not contain Holliday junctions. Based on mapping to UniProt P0A809.

4

CATH Domain 1cukA01

http://cath.biochem.ucl.ac.uk/version/latest/domain/1cukA01/neighbourhood

Superfamily 2.40.50.140. Structural Relatives of Domain 1cukA01. Displaying structural neighbours for the domain 1cukA01. Click on an individual data point for more details on the structural comparison. Structural Neighbourhood of Representative 1cukA01. Decreasing Structural Similarity (Å) ». Increasing Sequence Similarity (% identity) ». Structural Similarity (SIMAX Score Å) versus Sequence Similarity (% identity). CATH: Protein Structure Classification Database.

5

CATH Superfamily 3.40.50.620

http://cath.biochem.ucl.ac.uk/version/latest/superfamily/3.40.50.620

CATH Superfamily 3.40.50.620. Superfamily 3.40.50.620. Overview of the Structural Clusters (SC) and Functional Families (FF) within this CATH Superfamily. Structural domains within this superfamily. View multi-domain architectures via ArchSchema (Laskowski/EBI). Evolution of Enzyme Function via FunTree (Furnham/EBI). FunTree (opens new window). Overview of the sequence / structure diversity of this superfamily compared to other superfamilies in CATH. Click on the chart to view the data in more detail.

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cathdb.info

CATH

http://www.cathdb.info/download

This directory contains all of the CATH-Gene3D database releases, from the first to the latest. All previous releases are in. And the latest release is in. This directory provides summary information of protein domains putatively classified in CATH since the last release. For each date with a CATH-B entry, there should be four files, e.g.:. Combination of the 'latest release' and 'putative entries' files. All domains that were in the latest release of CATH. V2 0 v2 4 v2 5 v2 5 1 v2 5 3 v2 6 0 v3 0 0 v3 1...

cathdb.info

CATH

http://www.cathdb.info/support

Forum / Mailing List. Listening to feedback has played a huge part in helping us shape the CATH resource over the years. Please do get in touch and let us know how we're doing: what we've done right, where we've gone wrong or what you would like to see added or improved. Follow us on Twitter at @CATHDatabase. To get the latest updates from the Orengo group. Check out the latest blog posts. From the Orengo group. If you need to contact us via post, our address is:.

cathdb.info

CATH Domain 1cukA01

http://www.cathdb.info/version/latest/domain/1cukA01/neighbourhood

Superfamily 2.40.50.140. Structural Relatives of Domain 1cukA01. Displaying structural neighbours for the domain 1cukA01. Click on an individual data point for more details on the structural comparison. Structural Neighbourhood of Representative 1cukA01. Decreasing Structural Similarity (Å) ». Increasing Sequence Similarity (% identity) ». Structural Similarity (SIMAX Score Å) versus Sequence Similarity (% identity). CATH: Protein Structure Classification Database.

cathdb.info

PDB 2bop

http://www.cathdb.info/pdb/2bop

Bovine papillomavirus type 1. Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target. Hegde, R.S., Grossman, S.R., Laimins, L.A., Sigler, P.B. 05 Mar, 2006. Date inserted into CATH. 05 Mar, 2006. 15 Mar, 2006. Date inserted into CATH. 05 Mar, 2006. Bovine papillomavirus type 1. CATH: Protein Structure Classification Database. By I Sillitoe, N. Dawson, T. Lewis, D. Lee, J. Lees, C. Orengo. Based on work at http:/ cath.biochem.ucl.ac.uk.

cathdb.info

CATH Superfamily 3.40.50.620

http://www.cathdb.info/version/latest/superfamily/3.40.50.620

CATH Superfamily 3.40.50.620. Superfamily 3.40.50.620. Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle. Structural domains within this superfamily. View multi-domain architectures via ArchSchema (Laskowski/EBI). Evolution of Enzyme Function via FunTree (Furnham/EBI). FunTree (opens new window). A general summary of information for this superfamily. Domain clusters ( 95% seq id):.

cathdb.info

Browse CATH-Gene3D Hierarchy

http://www.cathdb.info/browse/tree

Select a CATH node. CATH: Protein Structure Classification Database. By I Sillitoe, N. Dawson, T. Lewis, D. Lee, J. Lees, C. Orengo. Is licensed under a Creative Commons Attribution 4.0 International License. Based on work at http:/ cath.biochem.ucl.ac.uk.

cathdb.info

CATH

http://www.cathdb.info/wiki

How is CATH-Gene3D created? The CATH database is a free, publicly available online resource that provides information on the evolutionary relationships of protein domains. It was created in the mid-1990s by Professor Christine Orengo and colleagues, and continues to be developed by the Orengo group at University College London. How is CATH-Gene3D created? In order to address this issue: CATH-B provides a limited amount of information to the very latest domain annotations (e.g. domain boundaries a...CATH ...

cathdb.info

CATH Domain 1cukA01

http://www.cathdb.info/version/latest/domain/1cukA01

Superfamily 2.40.50.140. OB fold (Dihydrolipoamide Acetyltransferase, E2P). Holliday junction DNA helicase RuvA. Based on mapping to UniProt P0A809. Endonucleolytic cleavage at a junction such as a reciprocal single- stranded crossover between two homologous DNA duplexes (Holliday junction). The enzyme from Saccharomyces cerevisiae has no endonuclease or exonuclease activity on single-stranded or double-stranded DNA molecules that do not contain Holliday junctions. Based on mapping to UniProt P0A809.

cathdb.info

Browse CATH-Gene3D Hierarchy

http://www.cathdb.info/browse

Select a CATH node. CATH: Protein Structure Classification Database. By I Sillitoe, N. Dawson, T. Lewis, D. Lee, J. Lees, C. Orengo. Is licensed under a Creative Commons Attribution 4.0 International License. Based on work at http:/ cath.biochem.ucl.ac.uk.

cathdb.info

CATH Superfamily 3.40.50.620

http://www.cathdb.info/version/latest/superfamily/3.40.50.620/funfam/52780/alignment

CATH Superfamily 3.40.50.620. Superfamily 3.40.50.620. Overview of the Structural Clusters (SC) and Functional Families (FF) within this CATH Superfamily. Laquo; Back to all FunFams. FunFam 52780: DNA photolyase. Representative CATH Domain 1np7B01. Sequence alignment 200 sequences. More information on the open source software used on this web site can be found in the Tools. CATH: Protein Structure Classification Database. By I Sillitoe, N. Dawson, T. Lewis, D. Lee, J. Lees, C. Orengo.

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CATH: Protein Structure Classification Database at UCL

By ID / keywords. 26 million protein domains classified into 2,738 superfamilies. Take the Tour ». CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. Search CATH by text, ID or keyword. Search CATH by protein sequence (FASTA). Search CATH by PDB structure. CATH v4.0 based on PDB dated March 26, 2013. Gene3D v12 released March 18, 2012.

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