wiki.scinet.utoronto.ca
Hdf5 - SciNetWiki
https://wiki.scinet.utoronto.ca/wiki/index.php/Hdf5
To compile a serial program that uses HDF5, use module. To set your paths correctly, then link the libraries at compile time. In this example, the C-source code test.c. Uses both the base HDF5 libraries and the newer high-level routines (i.e. it has #include "hdf5.h". And #include "hdf5 hl.h". Module purge module load intel hdf5/187-v18-serial-intel. Icc -o test test.c -lhdf5 hl -lhdf5 -limf #or, if you prefer to be explicit, icc -o test test.c -L${SCINET HDF5 LIB} -lhdf5 hl -lhdf5 -limf. This page was l...
wiki.scinet.utoronto.ca
2015 Ontario Summer School for High Performance Computing Central - SciNetWiki
https://wiki.scinet.utoronto.ca/wiki/index.php/2015_Ontario_Summer_School_for_High_Performance_Computing_Central
2015 Ontario Summer School for High Performance Computing Central. The 2015 Ontario Summer School on High Performance Computing, whose second installment of the year will be hosted by SciNet, provides attendees with opportunities to learn and share knowledge and experience in high performance and technical computing. The format: a five-day workshop with mixed lectures and hands-on sessions on a number of selected subjects, including shared memory programming, distributed memory programming, parallel ...
wiki.scinet.utoronto.ca
SciNet Command Line Utilities - SciNetWiki
https://wiki.scinet.utoronto.ca/wiki/index.php/SciNet_Command_Line_Utilities
SciNet Command Line Utilities. Below is list of handy command-line utilities written by SciNet to help manage your data and compute. Note that in the table, optional arguments are denoted with square brackets (i.e. ' []'. While mandatory arguments are denoted with angular brackets (i.e. ' '. Short overview of a user's storage usage. To see all command options. Informs about the user and group file system usage. Lists your directories that have over 1,000 files. Most showq arguments work. Taking into acco...
wiki.scinet.utoronto.ca
Data Management - SciNetWiki
https://wiki.scinet.utoronto.ca/wiki/index.php/Data_Management
Overview of the different file systems. Scratch Disk Purging Policy. How much Disk Space Do I have left? Buying storage space on GPFS or HPSS. Ways to transfer data. High Performance Storage System (HPSS). More questions on data management? SciNet's storage system is based on IBM's GPFS. General Parallel File System). There are two main systems for user data:. A small, backed-up space where user home directories are located, and. A large system for input or output data for jobs; data on. Is not a good pl...
wiki.scinet.utoronto.ca
BGQ - SciNetWiki
https://wiki.scinet.utoronto.ca/wiki/index.php/BGQ
Aug 2012, Nov 2014. RH63, CNK (Linux). 4096 nodes (65,536 cores). 5D Torus (jobs), QDR Infiniband (I/O). Modules and Environment Variables. How to set ranks-per-node. Steps ( Job dependency). Interactive Use / Debugging. How much Disk Space Do I have left? Software modules installed on the BGQ. The current BGQ system status can be found on the wiki's Main Page. The BGQ is a Southern Ontario Smart Computing Innovation Platform ( SOSCIP. Currently at the 120th place (Nov 2015). Ssh -l USERNAME bgqdev.s...
wiki.scinet.utoronto.ca
HPSS - SciNetWiki
https://wiki.scinet.utoronto.ca/wiki/index.php/HPSS
High Performance Storage System. Why should I use and trust HPSS? New to the System? Bridge between BGQ and HPSS. Access Through the Queue System. File and directory management. HPSS for the 'Watchmaker'. Access to HPSS using Globus. Access to HPSS using SME. High Performance Storage System. The High Performance Storage System ( HPSS. Is a client with an ftp-like functionality which can be used to archive and retrieve large files. It is also useful for browsing the contents of HPSS. Is a utility that cre...
scinethpc.ca
Upcoming SciNet Events | SciNet | Science At Scale
http://www.scinethpc.ca/upcoming-events
SciNet Science At Scale. Training & Education. Education, Training, and Outreach. Intro to SciNet (HPC105 Intro to SciNet (Sept. 2016) , SciNet Conference/Boardroom (MaRS Building). 661 University Ave., Toronto, M5G 1M1, Canada. SciNet User Group Meeting (Sept. 2016). SciNet User Group Meeting (Sept. 2016), SciNet Conference/Boardroom (MaRS Building). 661 University Ave., Toronto, M5G 1M1, Canada. Advanced Parallel Scientific Computing. 661 University Ave., Toronto, M5G 1M1, Canada. 661 University Ave...
docs.computecanada.ca
General directives for migration - CC Doc
https://docs.computecanada.ca/wiki/General_Directives_for_Migration
General directives for migration. Redirected from General Directives for Migration. This page is for users of Compute Canada clusters concerned about data migration. It explains issues related to transferring your data between Compute Canada facilities and its regional partners ( ACENET. If you are in any doubt about details of the following advice, contact support@computecanada.ca. What to do before the migration starts? What to do during the migration process? What to do after migration? It is a good p...
docs.computecanada.ca
Visualization - CC Doc
https://docs.computecanada.ca/wiki/Visualization
External documentation for popular visualization packages. Visualization on new Compute Canada systems. Running client-server ParaView and client-server VisIt in a cloud VM. Compiling ParaView with OSMesa. Running ParaView in client-server mode. Compiling VisIt with Mesa. Running VisIt in client-server mode. Compute Canada visualization presentation materials. Full- or half-day workshops. Webinars and other short presentations. SciNet, HPC at the University of Toronto. How to get visualization help.