daslab.github.io

DasLab

Rhiju Das Lab @ Stanford Biochemistry. Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs. We strive to predict how biomolecule sequence code for their behavior. Best Inference Engine for RNA Structure. LIkelihood-based Fits of Folding Transitions. Analysis of 2D signal in mutational profiling (MaP) sequencing data.

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Rhiju Das Lab @ Stanford Biochemistry. Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs. We strive to predict how biomolecule sequence code for their behavior. Best Inference Engine for RNA Structure. LIkelihood-based Fits of Folding Transitions. Analysis of 2D signal in mutational profiling (MaP) sequencing data.

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DasLab | daslab.github.io Reviews

https://daslab.github.io

Rhiju Das Lab @ Stanford Biochemistry. Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs. We strive to predict how biomolecule sequence code for their behavior. Best Inference Engine for RNA Structure. LIkelihood-based Fits of Folding Transitions. Analysis of 2D signal in mutational profiling (MaP) sequencing data.

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daslab.github.io

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Biers | RiboKit

http://daslab.github.io/Biers

Is a set of. Scripts that wrap around the RNAstructure. Suite of executables to infer secondary structure models guided by chemical mapping data. Features include:. Secondary structure modeling guided by SHAPE and DMS probing, as well as data from mutate-and-map experiments. Secondary structure modeling guided by MOHCA data. Calculation of helix-wise confidence values using bootstrapping. Tutorial is available for:. Is described in LICENSE.md. Developed by Das lab. Leland Stanford Junior University.

2

Primerize Documentation — Primerize 1.6.2 : PCR Assembly Primer Design | RiboKit

http://daslab.github.io/Primerize

PCR Assembly Primer Design. Is an archive of. Scripts for primer design and nucleic acid thermodynamic scripts developed by the Das Lab. At Stanford University for high-throughput RNA synthesis and design. Anti-sense strand) primers that minimize the total length, and therefore the total synthesis cost, of the oligonucleotides. Although developed independently,. Is a special case of the general ‘. Algorithm, optimizing the mispriming score and sequence span instead of T. Please visit the Primerize.

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t47.io

SIQI TIAN - Portfolio: RiboKit Docs | T47.IO

https://t47.io/project/ribokit

Centralized Documentation of Packages Hosted by GitHub Pages. Https:/ ribokit.github.io/. Https:/ daslab.github.io/. Https:/ hitrace.github.io/. Automated integration with Sphinx to gh-pages branch. Jekyll front-matter customized template. Developed theme with navigation levels, syntax highlighting, 404 / 301 pages. Complete Guide for Format and Integration. Https:/ ribokit.github.io/. Https:/ daslab.github.io/. Https:/ hitrace.github.io/. Designed, built and managed by. On this site is licensed under.

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daslab.github.io

DasLab

Rhiju Das Lab @ Stanford Biochemistry. Our lab seeks an agile and predictive understanding of how RNAs code for information processing and replication in living systems. We are creating new computational and chemical tools to enable the precise modeling and design of these RNAs. We strive to predict how biomolecule sequence code for their behavior. Best Inference Engine for RNA Structure. LIkelihood-based Fits of Folding Transitions. Analysis of 2D signal in mutational profiling (MaP) sequencing data.

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