docs.geppetto.org

Introduction — Geppetto 0.2.3 documentation

For Users ». Geppetto is a web-based. Multi-algorithm, multi-scale simulation platform engineered to support the simulation of complex biological systems. And their surrounding environment. Geppetto’s integrative approach to biological modeling is at the heart of the Open Worm project. Download the latest version. If you are looking for instructions on how to use Geppetto, check out our user documentation. Source Setup on OSX and Linux. Source Setup on Windows. Geppetto Source Files Documentation.

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For Users ». Geppetto is a web-based. Multi-algorithm, multi-scale simulation platform engineered to support the simulation of complex biological systems. And their surrounding environment. Geppetto’s integrative approach to biological modeling is at the heart of the Open Worm project. Download the latest version. If you are looking for instructions on how to use Geppetto, check out our user documentation. Source Setup on OSX and Linux. Source Setup on Windows. Geppetto Source Files Documentation.

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Introduction — Geppetto 0.2.3 documentation | docs.geppetto.org Reviews

https://docs.geppetto.org

For Users ». Geppetto is a web-based. Multi-algorithm, multi-scale simulation platform engineered to support the simulation of complex biological systems. And their surrounding environment. Geppetto’s integrative approach to biological modeling is at the heart of the Open Worm project. Download the latest version. If you are looking for instructions on how to use Geppetto, check out our user documentation. Source Setup on OSX and Linux. Source Setup on Windows. Geppetto Source Files Documentation.

INTERNAL PAGES

docs.geppetto.org

1

Geppetto Build — Geppetto 0.3.2 documentation

http://docs.geppetto.org/en/latest/build.html

Geppetto is build with Maven, using the command. Maven allows for different build steps to be specified for different environments. These optional lists of build steps are called profiles. When building for a production environment, certain steps are followed that are not desired in a development environment. These changes are made via Grunt tasks:. Less compiled to CSS? Mvn install -P master. Mvn install -P development. The “development” profile undoes the changes introduced by the “ma...

2

Visualizing Connections — Geppetto 0.3.2 documentation

http://docs.geppetto.org/en/latest/connections.html

The first step to visualize connections is to load a Simulation that has connected entities. From our current samples list, the “C302 Experimental Network of integrate and fire neurons” model is a good model to see connections in action. The picture below shows the color coding for the different kinds of connections:. For the rest of available commands for connections. By default, input and output connections are shown, but this can be modified as explained in Changing Selection Options. By default, sele...

3

User documentation — Geppetto 0.3.2 documentation

http://docs.geppetto.org/en/latest/userdocs.html

Download Model and Results.

4

Widgets — Geppetto 0.3.2 documentation

http://docs.geppetto.org/en/latest/usingwidgets.html

Geppetto has a modular architecture that allows to visualize and interact with the data through different widgets. Widgets are an essential aspect of the user interface of Geppetto. You can imagine them as “at-a-glance” views of data and functionality that is accessible right from the browser. Users can move widgets across the screen, resize them and interact with their functionality through their API or the provided UI. Which would return a list like this:. A Scatter 3D widget shows a scatter plot.

5

For Developers — Geppetto 0.3.0 documentation

http://docs.geppetto.org/en/latest/devdocs.html

Before reporting a bug. Where to report a bug. How to report a bug. How to contribute code to Geppetto. Source Setup on OSX and Linux. Starting and Stopping Virgo. Source Setup on Windows. Starting and Stopping Virgo. Instructions for setting up Geppetto on Eclipse Luna. Create Virgo Server using Eclipse Virgo tooling. Geppetto Source Files Documentation. Adding Widget to Geppetto. Using a Widget Inside Geppetto. Contributing to other widgets. Allow other widgets to contribute to my widget.

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docs.openworm.org

Geppetto - OpenWorm

http://docs.openworm.org/en/latest/Projects/geppetto

Muscle / Neuron / Channel. In order to allow the world to play with the model easily, we are engineering Geppetto. An open-source modular platform to enable multi-scale and multi-algorithm interactive simulation of biological systems. Geppetto features a built-in WebGL visualizer that offers out-of-the-box visualization of simulated models right in the browser. You can read about architectural concepts and learn more about the different plug-in bundles we are working on. Provided by Read the Docs.

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Introduction — Geppetto 0.2.3 documentation

For Users ». Geppetto is a web-based. Multi-algorithm, multi-scale simulation platform engineered to support the simulation of complex biological systems. And their surrounding environment. Geppetto’s integrative approach to biological modeling is at the heart of the Open Worm project. Download the latest version. If you are looking for instructions on how to use Geppetto, check out our user documentation. Source Setup on OSX and Linux. Source Setup on Windows. Geppetto Source Files Documentation.

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