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Protein Common Interface Database

PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database. Based on Pfam v31.0 and the PDB of June 2017). ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNA/RNA/Ligands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i...Pfam-...

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Protein Common Interface Database | dunbrack2.fccc.edu Reviews

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PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database. Based on Pfam v31.0 and the PDB of June 2017). ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNA/RNA/Ligands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i...Pfam-...

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Protein Common Interface Database | dunbrack2.fccc.edu Reviews

https://dunbrack2.fccc.edu

PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database. Based on Pfam v31.0 and the PDB of June 2017). ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNA/RNA/Ligands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i...Pfam-...

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dunbrack2.fccc.edu

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ProtCid:About

http://dunbrack2.fccc.edu/ProtCiD/About.aspx

ProtCid version 1.0 was generated at Roland Dunbrack's Lab. At Fox Chase Cancer Center. If you need any specific data that can be generated from our database, please feel free to contact the authors. Any comments, questions and suggestions, please contact the authors. Roland J. Dunbrack. Developed by Qifang Xu and Roland L. Dunbrack Jr; Last updated on November 25, 2015. Fox Chase Cancer Center.

2

ProtCid:Help

http://dunbrack2.fccc.edu/ProtCiD/Help/HelpSummary.aspx

ProtCID contains a large set of data compiled from various sources: protein structure data from the Protein Data Bank (PDB). Protein family architectures from PFAM. Biological Units from the PDB and Protein Interfaces, Surfaces and Assemblies (PISA). And alignment data generated from PISCES. And the programs FATCAT. As well as sequence information from the Universal Protein Resource (UniProt). Developed by Qifang Xu and Roland L. Dunbrack Jr; Last updated on November 25, 2015. Fox Chase Cancer Center.

3

Protein Common Interface Database

http://dunbrack2.fccc.edu/ProtCiD/PDBfam/default.aspx

Developed by Qifang Xu and Roland L. Dunbrack Jr; Last updated on November 25, 2015. Fox Chase Cancer Center.

4

ProtCid:Browse:PFAM

http://dunbrack2.fccc.edu/ProtCiD/Browse/PfamsInPdb.aspx

Browse PFAM in the PDB. Click on PFAM ID to get a list of PDB entries containing the PFAM. Developed by Qifang Xu and Roland L. Dunbrack Jr; Last updated on November 25, 2015. Fox Chase Cancer Center.

5

ProtCid:Home

http://dunbrack2.fccc.edu/protcid

PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database (October, 2015). However, we do not explicitly assign a probability of biological relevance to each interface cluster. For more details about the algorithm and benchmarking, please refers to our paper "Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins." and the Help File. You can search ProtCID in three ways:. PFAM ID or PFAM Accession...

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dunbrack2.fccc.edu

Protein Common Interface Database

PFAM assignments in the PDB improved by consensus sequences, HMM-HMM alignmnets, and structure alignments. Protein Common Interfaces Database. Based on Pfam v31.0 and the PDB of June 2017). ProtCID now contains clusters of Pfam domain interfaces, Pfam-peptide interfaces and Pfam-DNA/RNA/Ligands interactions. For domain-domain interfaces, we use Pfam domains defined in our PDBfam database. PDB entries are grouped into Pfam-Pfam relations. One entry may belong to different Pfam-Pfam relations, if i...Pfam-...

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