enterix.cbcb.umd.edu

Visualization tools for microbial genome alignments

Visualization Tools for Microbial Genome Alignments. The EnteriX servers allow comparative views of a reference bacterial or virus genome with sequences from several related organisms using two different visualization tools. The Enteric. Server offers large-scale views of pairwise alignments, with point-and-click capabilities to retrieve related gene and alignment information. The Menteric. Other organisms can be integrated upon request, and as sequence data become available. 18), 3486-96. [Medline].

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Visualization tools for microbial genome alignments | enterix.cbcb.umd.edu Reviews

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Visualization Tools for Microbial Genome Alignments. The EnteriX servers allow comparative views of a reference bacterial or virus genome with sequences from several related organisms using two different visualization tools. The Enteric. Server offers large-scale views of pairwise alignments, with point-and-click capabilities to retrieve related gene and alignment information. The Menteric. Other organisms can be integrated upon request, and as sequence data become available. 18), 3486-96. [Medline].

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Visualization tools for microbial genome alignments | enterix.cbcb.umd.edu Reviews

https://enterix.cbcb.umd.edu

Visualization Tools for Microbial Genome Alignments. The EnteriX servers allow comparative views of a reference bacterial or virus genome with sequences from several related organisms using two different visualization tools. The Enteric. Server offers large-scale views of pairwise alignments, with point-and-click capabilities to retrieve related gene and alignment information. The Menteric. Other organisms can be integrated upon request, and as sequence data become available. 18), 3486-96. [Medline].

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enterix.cbcb.umd.edu

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Enterix: Menteric description

http://enterix.cbcb.umd.edu/menteric/description.html

Web server computes and displays nucleotide-level multiple alignments of sequences from several related bacterial or viral genomes, together with annotations of functional sites and conserved regions. Views are calculated in a 1Kb region starting at the user-specified address in the reference genome, or centered about the start site of the user-supplied gene. The alignment is rendered as a PostScript or PDF document. A list of current reference genomes can be found here. Protein binding sites in red.

2

Enterix: Enteric description

http://enterix.cbcb.umd.edu/enteric/description.html

Server produces a hypertext view of the pairwise alignments of a reference genome with several related bacterial or viral genomes. Covering 20Kb around a user-specified position or gene in the reference. A list of currently supported reference genomes is here. Other organisms can be integrated upon request, and as sequence data become available. For each of the compared genomes, pairwise alignments with the reference. The alignment information is displayed as a set of ` PIPs' ( Percent Identity Plots.

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References

http://enterix.cbcb.umd.edu/references.html

1] Florea, L., C. Riemer, S. Schwartz, Z. Zhang, N. Stojanovic, W. Miller, M. McClelland (2000) Web-based visualization tools for bacterial genome alignments, Nucleic Acids Research. 18), 3486-96. [ Medline. 2] Florea, L., C. Riemer, S. Schwartz, M. McClelland, W. Miller (2000) Web-based visualization tools for bacterial genome alignments, TIGR - Fourth Annual Conference on Microbial Genomes. 13), 3527-32. [ Medline. 18), 4974-86. [ Medline. 6858), 852-856. [Medline]. 7), 1869-1876. [Medline]. 7] Porwoll...

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EnteriX reference genomes

http://enterix.cbcb.umd.edu//reference_genomes.html

The following species have genome-centered Enteric ( E. And/or Menteric ( M.

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enterix.cbcb.umd.edu

Visualization tools for microbial genome alignments

Visualization Tools for Microbial Genome Alignments. The EnteriX servers allow comparative views of a reference bacterial or virus genome with sequences from several related organisms using two different visualization tools. The Enteric. Server offers large-scale views of pairwise alignments, with point-and-click capabilities to retrieve related gene and alignment information. The Menteric. Other organisms can be integrated upon request, and as sequence data become available. 18), 3486-96. [Medline].

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