foldalign.ku.dk foldalign.ku.dk

foldalign.ku.dk

FOLDALIGN

RNA Structure and Sequence alignment. Foldalign version 2.1.1 is now available. Get the software here. FoldalignM version 1.0.1 is now available. Get the software here. The FOLDALIGN web server 2.1.0.A is available here. The new Semi-Automated RNA Sequence Editor SARSE. Might also be of interest. Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. Havgaard JH, Torarinsson E, Gorodkin J. PLOS computational biology. 3:e193, 2007.

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RNA Structure and Sequence alignment. Foldalign version 2.1.1 is now available. Get the software here. FoldalignM version 1.0.1 is now available. Get the software here. The FOLDALIGN web server 2.1.0.A is available here. The new Semi-Automated RNA Sequence Editor SARSE. Might also be of interest. Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. Havgaard JH, Torarinsson E, Gorodkin J. PLOS computational biology. 3:e193, 2007.
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FOLDALIGN | foldalign.ku.dk Reviews

https://foldalign.ku.dk

RNA Structure and Sequence alignment. Foldalign version 2.1.1 is now available. Get the software here. FoldalignM version 1.0.1 is now available. Get the software here. The FOLDALIGN web server 2.1.0.A is available here. The new Semi-Automated RNA Sequence Editor SARSE. Might also be of interest. Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. Havgaard JH, Torarinsson E, Gorodkin J. PLOS computational biology. 3:e193, 2007.

LINKS TO THIS WEBSITE

rth.dk rth.dk

Center for non-coding RNA in Technology and Health - Resources

http://rth.dk/resources

This page contains an overview of webservers, software and databases in relation to publications. Foldalign 2.5: Parallel version for Foldalign for structural alignment of RNA sequences. RNAcop: Optimizing RNA structures by sequence extensions. Identifying local RNA structures disrupted by SNPs. DeepBlockAlign for RNA-seq of miRNA. Compare RNA-seq data to a database of pre-compiled miRNA RNA-seq profiles. Integrated frame­work with PETfold. RNA 3D modules in structural alignments. Alternative splicing in...

hudsonvalleyrnaclub.org hudsonvalleyrnaclub.org

Software | The Hudson Valley RNA Club

http://www.hudsonvalleyrnaclub.org/software

The Hudson Valley RNA Club. Software for analyzing the hypothetical secondary structure of a family of homologous RNA, predicting if there is a shared secondary structure, and predicting the folded stems in it. The input is a set of single-stranded RNA sequences that need not to be aligned. A thermodynamic model with energy minimization combined with locally conserved primary structure and sequence covariations is used. CONTRA (CONditional TRAining for biosequence analysis) is a software project that app...

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RNA Structure and Sequence alignment. Foldalign version 2.1.1 is now available. Get the software here. FoldalignM version 1.0.1 is now available. Get the software here. The FOLDALIGN web server 2.1.0.A is available here. The new Semi-Automated RNA Sequence Editor SARSE. Might also be of interest. Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. Havgaard JH, Torarinsson E, Gorodkin J. PLOS computational biology. 3:e193, 2007.

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