fourmidable-prod.vital-it.ch

EMBnet node Switzerland

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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EMBnet node Switzerland | fourmidable-prod.vital-it.ch Reviews

<META> DESCRIPTION

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

<META> KEYWORDS

1 embnet node switzerland

2 boxshade

3 clustalw

4 coils

5 fetch

6 ftp server

7 ipcr

8 lalign

9 prss

10 tmpred

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embnet node switzerland,boxshade,clustalw,coils,fetch,ftp server,ipcr,lalign,prss,tmpred,transmembrane regions detection,molecular dynamics tutorial,embnet guides

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EMBnet node Switzerland | fourmidable-prod.vital-it.ch Reviews

https://fourmidable-prod.vital-it.ch

Bioinformatics tools, databases. Pretty printing of MSAs. MSA (Multiple Sequence Alignment). Comparison with coiled-coils database. Obtain sequence from database. Access to tools and DBs. Extract DNA segments between two primers. Alignment of 2 sequences. Optimal score of alignment. More resources: ExPASy: SIB Bioinformatics Resources Portal. Education, courses, documentation. SIB bioinformatics course portal. EMBnet course list archive. MD tutorial.tar.gz. BLAST - replacement: BLAST on ExPASy.

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fourmidable-prod.vital-it.ch

1

ClustalW Server

http://fourmidable-prod.vital-it.ch/software/ClustalW.html

Valid format for input is: FASTA(Pearson). Max number of sequences = 30. Max total length of sequences = 10000. More information on Clustal home page. Opening gap penalty :. Extending gap penalty :. End gap penalty :. Separation gap penalty :. See above for valid formats). SIB Swiss Institute of Bioinformatics. Back to the Top.

2

Home MD

http://fourmidable-prod.vital-it.ch/MD_tutorial

3

TMpred Server

http://fourmidable-prod.vital-it.ch/software/TMPRED_form.html

Prediction of Transmembrane Regions and Orientation. The TMpred program makes a prediction of membrane-spanning regions and their orientation. The algorithm is based on the statistical analysis of TMbase, a database of naturally occurring transmembrane proteins. The prediction is made using a combination of several weight-matrices for scoring. K Hofmann and W. Stoffel. TMbase - A database of membrane spanning proteins segments. Biol Chem. Hoppe-Seyler 374. For further information see the TMbase.

4

iPCR Server

http://fourmidable-prod.vital-it.ch/software/iPCR_form.html

Paste a DNA sequence, ID or AC (ex. U73445) and the two primers (ex. forward AAA[AT]AA and reverse AAAGGG), select the format, and the options and click the Run iPCR button. The primer syntax allows the square parenthesis ([]) to specify an alternative and the dot (.) to replace the N for any nucleotide. The degenerated code is not allowed. Make sure that the format button shows the correct format. EMBL ID or AC. EST ID or AC. Paste your sequence here:. Or ID or accession number). Back to the Top.

5

EMBnet node Switzerland

http://fourmidable-prod.vital-it.ch/pages/courses.html

A full list of SIB courses can be found on the Bioinformatics Course Portal of the SIB. Below, we list EMBnet courses from 1997 to 2010 that have not been migrated to the SIB educational portal. Please contact us. In case you need access to some of the old course material. 13 Sep - 17 Sep, 2010. Computational Analysis Of Ultra-high-throughput (uht) Sequencing Data. 25 Jan - 29 Jan, 2010. Introduction To Statistics For Biologists. 31 Aug - 04 Sep, 2009. Advanced Programming For Biologists. 28 Feb - 04 Mar...

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