gpsprot.org

GPS-Prot: Data Visualization for Protein-Protein Interactions

GPS-Prot: Data Visualization for Protein-Protein Interactions. Display and explore comprehensive PPI networks. Javascript must be enabled to use the viewer. To start, enter a gene name or UniProt ID in the search box:. Or click graphic to view a demo of an HIV-1-host network. Human Protein Interactions (HIPPIE v2.1: includes DIP, BioGRID, IntAct databases and more). Fahey et al., BMC Bioinformatics, 12: 298. PMCID: PMC3213248. In any use of GPS-Prot. Version 3.1.4.

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GPS-Prot: Data Visualization for Protein-Protein Interactions | gpsprot.org Reviews

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GPS-Prot: Data Visualization for Protein-Protein Interactions. Display and explore comprehensive PPI networks. Javascript must be enabled to use the viewer. To start, enter a gene name or UniProt ID in the search box:. Or click graphic to view a demo of an HIV-1-host network. Human Protein Interactions (HIPPIE v2.1: includes DIP, BioGRID, IntAct databases and more). Fahey et al., BMC Bioinformatics, 12: 298. PMCID: PMC3213248. In any use of GPS-Prot. Version 3.1.4.

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1 gps prot

2 navigator

3 user guide

4 databases

5 features

6 human &middot hiv 1

7 statistics update 1/1/18

8 hiv 1 protein interactions

9 hiv 1 screen hits

10 non redundant interactions

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gps prot,navigator,user guide,databases,features,human &middot hiv 1,statistics update 1/1/18,hiv 1 protein interactions,hiv 1 screen hits,non redundant interactions,please cite

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GPS-Prot: Data Visualization for Protein-Protein Interactions | gpsprot.org Reviews

https://gpsprot.org

GPS-Prot: Data Visualization for Protein-Protein Interactions. Display and explore comprehensive PPI networks. Javascript must be enabled to use the viewer. To start, enter a gene name or UniProt ID in the search box:. Or click graphic to view a demo of an HIV-1-host network. Human Protein Interactions (HIPPIE v2.1: includes DIP, BioGRID, IntAct databases and more). Fahey et al., BMC Bioinformatics, 12: 298. PMCID: PMC3213248. In any use of GPS-Prot. Version 3.1.4.

INTERNAL PAGES

gpsprot.org

1

GPS-Prot: FAQs and Help

http://gpsprot.org/faq.php

Because the curation of PPIs from literature can be variable. Comma; it is highly recommended that users consult the primary literature to verify information about PPIs of interest&period;. I&period; HELP WITH THE VIEWER. Q1&period; I'm having trouble getting the Navigator viewer to work. What should I do&quest;. With your bug reports so we can fix any problems promptly. Q1&period; Where does confidence score come from&quest; Is it supplied by the databases&quest;. Or you have selected only genetic/p...

2

GPS-Prot: The Visual, Interactive, Shareable Way to Look at Protein Interaction Databases

http://gpsprot.org/features.php

GPS-Prot is the quickest and easiest way to begin exploring the questions: &OpenCurlyDoubleQuote;What does my protein of interest bind to? Rdquor; and &OpenCurlyDoubleQuote;What are the publications and data supporting this interaction? COMPREHENSIVE: more than 200,000 unique Scored Human PPIs from major curated databases (Biogrid, MINT, IntACT, DIP, HPRD, MIPS and more, as implemented in HIPPIE). VISUAL: Graphical protein browser - easy and intuitive. SHAREABLE: Link to your network with a sim...

3

GPS-Prot Navigator

http://gpsprot.org/navigator.php

Enter a Gene Name:. Dlabel : d.value}. To upload your own data sources. Javascript must be enabled for this site.

4

GPS-Prot: User Guide

http://gpsprot.org/userguide.php

GPS-Prot searches databases and displays results in the Navigator window. Double click any protein in the network to expand the network. Increase or decrease the number of proteins shown with the Confidence Score slider. Confidence scores are calculated as described below. Color Key: PPIs are colored Green. Proteomic/genomic screen hits (implemented for HIV only at this time) can be overlaid on the existing PPI network. Such nodes are colored Yellow. Create an account. Lists information for Proteins or I...

5

GPS-Prot

http://gpsprot.org/versions.php

09/21/15 Version 3.0.3. Fix scoring for interactions with no pubmed ids. 09/20/15 Version 3.0.2. Fix query bug that excluded some HIPPIE interactions from search results. 09/16/15 Version 3.0.1. Updated to latest HIPPIE dataset (09/11/15). 09/07/15 Version 3.0.0. Replaced Java viewer with Javascript. 01/13/14 Version 2.1. Updated to latest HIPPIE dataset (10/11/13). 08/20/12 Version 2.0. 12/21/11 Version 1.03. 01/31/11 Version 1.02. 04/13/10 Version 1.01.

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harc.ucsf.edu

Visualization of Positive Transcription Elongation Factor b (P-TEFb) Activation in Living Cells | The HARC Center

http://harc.ucsf.edu/news/visualization-positive-transcription-elongation-factor-b-p-tefb-activation-living-cells

Skip to main content. Visualization of Positive Transcription Elongation Factor b (P-TEFb) Activation in Living Cells. Visualization of Positive Transcription Elongation Factor b (P-TEFb) Activation in Living Cells. Jan 5, 2015. GPS-Prot: Data Visualization for HIV-Host Interactions. NIH AIDS-Related Structural Biology Program. Genentech Hall, S572, MC 2280, 600 16th Street. San Francisco, California 94158-2517. 2007-2016 The HARC Center, UCSF.

hivppi.pitt.edu

Data and Tools

http://www.hivppi.pitt.edu/index.php/data-and-tools

Pittsburgh Center for HIV Protein Interactions. Cryo-EM reconstruction of the maedi-visna virus (MVV) strand transfer complex ( Ballandras-Colas et al, 2017. Single particle helical reconstruction of protease cleavage product from HIV-1 Gag VLPs ( Ning et al, 2016. HIV-1 reverse transcriptase thumb subdomain ( Sharaf et al, 2016. Also see: BioMagResBank entry 30171. The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex ( Wu et al, 2016. Also see: BioMagResBank entry 25985. Crystal structure of the tetra...

harc.ucsf.edu

Publications | The HARC Center

http://harc.ucsf.edu/content/publications

Skip to main content. A selection of recent publications from the HARC Center. Gable JE, Lee GM, Acker TM, Hulce KR, Gonzalez ER, Schweigler P, Melkko S, Farady CJ, Craik CS. Fragment-Based Protein-Protein Interaction Antagonists of a Viral Dimeric Protease. ChemMedChem. 2016 Apr 19;11(8):862-9. doi: 10.1002/cmdc.201500526. Epub 2016 Jan 28. PubMed PMID: 26822284; PubMed Central PMCID: PMC4838516. Cary DC, Fujinaga K, Peterlin BM. Molecular mechanisms of HIV latency. Jones SK Jr, Clarke SC, Craik CS, Ben...

harc.ucsf.edu

Send page by email | The HARC Center

http://harc.ucsf.edu/printmail/1

Skip to main content. Send page by email. Send page by email. Enter multiple addresses separated by commas and/or different lines. Page to be sent. A Collaborative Research Center at UCSF and Berkeley to Study HIV Accessory and Regulatory Complexes. GPS-Prot: Data Visualization for HIV-Host Interactions. NIH AIDS-Related Structural Biology Program. Genentech Hall, S572, MC 2280, 600 16th Street. San Francisco, California 94158-2517. 2007-2016 The HARC Center, UCSF.

harc.ucsf.edu

News, Awards and Announcements | The HARC Center

http://harc.ucsf.edu/news-awards-and-announcements

Skip to main content. News, Awards and Announcements. News, Awards and Announcements. March 2016. Jennifer Doudna will be honored as a laureate of the 2016 L'Oreal-UNESCO Women in Science Awards in the field of life sciences in a Ceremony at the Sorbonne University . February 2016. James Hurley will be a keynote speaker at the Conference on Retroviruses and Opportunistic Infections. CROI), Boston, MA. July 2015. Jennifer Doudna and Crispr are featured in a cover article in Wired magazine. June 24, 2015&#...

harc.ucsf.edu

Events | The HARC Center

http://harc.ucsf.edu/events

Skip to main content. HARC-Sponsored Seminar: Yong Xiong, Yale University. This seminar will be held as part of the BBC Seminar Series at UCSF. October 20, 2016. Genentech Hall Auditorium Mission Bay. Structural Biology Related to HIV/AIDS - 2017 Meeting. June 29, 2017. To June 30, 2017. GPS-Prot: Data Visualization for HIV-Host Interactions. NIH AIDS-Related Structural Biology Program. Genentech Hall, S572, MC 2280, 600 16th Street. San Francisco, California 94158-2517. 2007-2016 The HARC Center, UCSF.

harc.ucsf.edu

Collaborative Opportunity Fund | The HARC Center

http://harc.ucsf.edu/collaborative-opportunity-fund

Skip to main content. The Collaborative Opportunity Fund. We encourage the HIV community and also new and non-HIV investigators to apply. Applicants must be employed at an institution in the United States that is eligible to administer NIH funds. The fund is now closed to applications. Awards of up to $100,000 (total costs) will be made for one year, with a potential second year of funding to be awarded in a competitive renewal process. Contact HARC Program Manager, Melanie Brewer.

harc.ucsf.edu

Generation of knock-in primary human T cells using Cas9 ribonucleoproteins | The HARC Center

http://harc.ucsf.edu/news/generation-knock-primary-human-t-cells-using-cas9-ribonucleoproteins

Skip to main content. Generation of knock-in primary human T cells using Cas9 ribonucleoproteins. Generation of knock-in primary human T cells using Cas9 ribonucleoproteins. Jul 28, 2015. Kathrin Schumann, Steven Linc, Eric Boyera, Dimitre R. Simeonova, Meena Subramaniame, Rachel E. Gatee, Genevieve E. Haliburton, Chun J. Yee , Jeffrey A. Bluestone, Jennifer A. Doudna, and Alexander Marson. F CXCR4, a coreceptor for HIV entry. Cas9 RNP electroporation caused up to 40% of cells to lose high-level cell...

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GPS-Prot: Data Visualization for Protein-Protein Interactions

GPS-Prot: Data Visualization for Protein-Protein Interactions. Display and explore comprehensive PPI networks. Javascript must be enabled to use the viewer. To start, enter a gene name or UniProt ID in the search box:. Or click graphic to view a demo of an HIV-1-host network. Human Protein Interactions (HIPPIE v2.1: includes DIP, BioGRID, IntAct databases and more). Fahey et al., BMC Bioinformatics, 12: 298. PMCID: PMC3213248. In any use of GPS-Prot. Version 3.1.4.

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