gregcaporaso.wordpress.com

Greg Caporaso

Integrating news feeds into Sphinx pages. I’ve worked on a few Sphinx. Based websites for software projects lately. (I’ve found the matplotlib sphinx tutorial. Useful for getting started.) A couple of examples are the PyCogent. One thing I’ve needed to do was integrate a news feed that is easy for developers on the project to update, without having to mess with uploading new html, sharing the site password, etc. The solution I came up with was creating a wordpress blog (e.g., PyCogent. One option you sho...

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Integrating news feeds into Sphinx pages. I’ve worked on a few Sphinx. Based websites for software projects lately. (I’ve found the matplotlib sphinx tutorial. Useful for getting started.) A couple of examples are the PyCogent. One thing I’ve needed to do was integrate a news feed that is easy for developers on the project to update, without having to mess with uploading new html, sharing the site password, etc. The solution I came up with was creating a wordpress blog (e.g., PyCogent. One option you sho...

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Greg Caporaso | gregcaporaso.wordpress.com Reviews

https://gregcaporaso.wordpress.com

Integrating news feeds into Sphinx pages. I’ve worked on a few Sphinx. Based websites for software projects lately. (I’ve found the matplotlib sphinx tutorial. Useful for getting started.) A couple of examples are the PyCogent. One thing I’ve needed to do was integrate a news feed that is easy for developers on the project to update, without having to mess with uploading new html, sharing the site password, etc. The solution I came up with was creating a wordpress blog (e.g., PyCogent. One option you sho...

INTERNAL PAGES

gregcaporaso.wordpress.com

1

Integrating news feeds into Sphinx pages | Greg Caporaso

https://gregcaporaso.wordpress.com/2010/01/26/integrating-news-feeds-into-sphinx-pages

Integrating news feeds into Sphinx pages. I’ve worked on a few Sphinx. Based websites for software projects lately. (I’ve found the matplotlib sphinx tutorial. Useful for getting started.) A couple of examples are the PyCogent. One thing I’ve needed to do was integrate a news feed that is easy for developers on the project to update, without having to mess with uploading new html, sharing the site password, etc. The solution I came up with was creating a wordpress blog (e.g., PyCogent. One option you sho...

2

When will I ever need to use trigonometry? (Or, how to avoid avalanche terrain.) | Greg Caporaso

https://gregcaporaso.wordpress.com/2009/08/21/when-will-i-ever-need-to-use-trigonometry-or-how-to-avoid-avalanche-terrain

When will I ever need to use trigonometry? Or, how to avoid avalanche terrain.). I sometimes tutor high school math, and as anyone who has done this knows, a common question is ‘But when will I ever need to use blank. 8217; This came up last year, where the blank. When will I ever need to use trigonometry? Comment if you have a good one! So, when I was backcountry skiing last winter and my friend Erik and I actually applied trigonometry to decide if it was safe to ski a certain slope, we were proud.

3

Building a tree of life with PyCogent | Greg Caporaso

https://gregcaporaso.wordpress.com/2009/10/03/building-a-tree-of-life-with-pycogent

Building a tree of life with PyCogent. This is a PyCogent. Use case that I put together for my lecture a few weeks ago in BIOI 7711 at UC Denver. I thought this was a cool example because it quickly shows some powerful aspects of PyCogent, including:. Parsers for common file formats (MinimalFastaParser);. Support for common biological data types (alignments, sequences, and trees);. Interaction with external applications (MUSCLE and FastTree) via the application controller framework;. First, we’ll l...

4

Script for performing intermolecular coevolutionary analysis with the PyCogent Bioinformatics Toolkit | Greg Caporaso

https://gregcaporaso.wordpress.com/2009/11/24/script-for-performing-intermolecular-coevolutionary-analysis-with-the-pycogent-bioinformatics-toolkit

Script for performing intermolecular coevolutionary analysis with the PyCogent Bioinformatics Toolkit. I’ve posted a script and a basic readme here. Which allows users of the python bioinformatics toolkit PyCogent. To run intermolecular coevolutionary analyses using PyCogent’s built-in coevolution module. PyCogent’s coevolution module supports several tree-aware and tree-ignorant methods for identifying pairs of coevolving pairs within and between biological sequences. Additionally it contains ...

5

Greg Caporaso | Page 2

https://gregcaporaso.wordpress.com/page/2

Python optparse example, part 2. Alright, so you’ve downloaded my optparse example. And now it’s time to look at some of the features it provides. Running this script with. Immediately gives the user (you? Useful information about how to interact with the script:. The first line we get is a usage statement telling us how to call the script. In this case it’s simple: there is one required argument,. When you create your own version of. Parse command line parameters(). Refers to optional parameters while.

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gregcaporaso.wordpress.com

Greg Caporaso

Integrating news feeds into Sphinx pages. I’ve worked on a few Sphinx. Based websites for software projects lately. (I’ve found the matplotlib sphinx tutorial. Useful for getting started.) A couple of examples are the PyCogent. One thing I’ve needed to do was integrate a news feed that is easy for developers on the project to update, without having to mess with uploading new html, sharing the site password, etc. The solution I came up with was creating a wordpress blog (e.g., PyCogent. One option you sho...

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