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Genome Cartography — Genome Cartography v1.0.0 documentation

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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Genome Cartography — Genome Cartography v1.0.0 documentation | h2az.atlas.bx.psu.edu Reviews
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Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.
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Genome Cartography — Genome Cartography v1.0.0 documentation | h2az.atlas.bx.psu.edu Reviews

https://h2az.atlas.bx.psu.edu

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

INTERNAL PAGES

h2az.atlas.bx.psu.edu h2az.atlas.bx.psu.edu
1

Genomic organization of human transcription initiation complexes

http://h2az.atlas.bx.psu.edu/project/human.html

Enter search terms or a module, class or function name. Genomic organization of human transcription initiation complexes. Genomic organization of human transcription initiation complexes. Bryan J. Venters, and B. Franklin Pugh. Nature 2013 Sep 18. doi: 10.1038/nature12535. Download the sequencing data. Frank Pugh and Bryan Venters.

2

Nucleosome Maps of the Drosophila Genome — Genome Cartography v1.0.0 documentation

http://h2az.atlas.bx.psu.edu/project/drosophila.html

Enter search terms or a module, class or function name. Nucleosome Maps of the Drosophila Genome. Nucleosome organization in the Drosophila genome. Travis N. Mavrich, Cizhong Jiang, Ilya P. Ioshikhes, Xiaoyong Li, Bryan J. Venters, Sara J. Zanton, Lynn P. Tomsho, Ji Qi, Robert Glaser, Stephan C. Schuster, David S. Gilmour, Istvan Albert, and B. Franklin Pugh. Nature 453, 358-362 (15 May 2008). Download the sequencing data. More information about GeneTrack.

3

People — Genome Cartography v1.0.0 documentation

http://h2az.atlas.bx.psu.edu/people.html

Using the SOLiD Pipeline. Enter search terms or a module, class or function name. We seek to foster collaborative, interdisciplinary research into fundamental gene regulation processes and their impact on cellular and developmental biology. Barbara Andersen - Research Technologist. Gerianne Brilhart - Research Technologist (Gilmour Lab, beginning June 2008). Dave Cantor - Undergraduate Student. Sujana Ghosh - Graduate Student. Christine Hemeryck - Research Technologist. Peony Jena - Research Technologist.

4

Software — Genome Cartography v1.0.0 documentation

http://h2az.atlas.bx.psu.edu/software/software-index.html

High performance computing guide. Enter search terms or a module, class or function name. We combine agile software development methodologies with the latest advances in computational infrastructure management. Using Amazon’s Elastic Compute Cloud. And Google’s Application Engine. We aim to build a low cost, efficient and scalable infrastructure that can handle the scientific data analysis and visualization challenges of the bioinformatics era. Using the SOLiD Pipeline. Step 1. Barcode Split.

5

Index — Genome Cartography v1.0.0 documentation

http://h2az.atlas.bx.psu.edu/genindex.html

Enter search terms or a module, class or function name.

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Maps of the Saccharomyces Genome — Genome Cartography v1.0.0 documentation

http://drosophila.atlas.bx.psu.edu/project/saccharomyces.html

Nucleosome Maps of the Drosophila Genome. Enter search terms or a module, class or function name. SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near 1 Nucleosomes. Yen K, Vinayachandran V,. Cell (2013 Sep 12). Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature (2012 Jan 18). Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell (2011 Dec 9). Supplementary Data Raw Sequencing Data. Zhang L, Ma H,. High-...

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Maps of the Saccharomyces Genome — Genome Cartography v1.0.0 documentation

http://atlas.bx.psu.edu/project/saccharomyces.html

Nucleosome Maps of the Drosophila Genome. Enter search terms or a module, class or function name. SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near 1 Nucleosomes. Yen K, Vinayachandran V,. Cell (2013 Sep 12). Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature (2012 Jan 18). Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell (2011 Dec 9). Supplementary Data Raw Sequencing Data. Zhang L, Ma H,. High-...

refnucl.atlas.bx.psu.edu refnucl.atlas.bx.psu.edu

Maps of the Saccharomyces Genome — Genome Cartography v1.0.0 documentation

http://refnucl.atlas.bx.psu.edu/project/saccharomyces.html

Nucleosome Maps of the Drosophila Genome. Enter search terms or a module, class or function name. SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near 1 Nucleosomes. Yen K, Vinayachandran V,. Cell (2013 Sep 12). Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature (2012 Jan 18). Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell (2011 Dec 9). Supplementary Data Raw Sequencing Data. Zhang L, Ma H,. High-...

liondb3.atlas.bx.psu.edu liondb3.atlas.bx.psu.edu

Maps of the Saccharomyces Genome — Genome Cartography v1.0.0 documentation

http://liondb3.atlas.bx.psu.edu/project/saccharomyces.html

Nucleosome Maps of the Drosophila Genome. Enter search terms or a module, class or function name. SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near 1 Nucleosomes. Yen K, Vinayachandran V,. Cell (2013 Sep 12). Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature (2012 Jan 18). Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell (2011 Dec 9). Supplementary Data Raw Sequencing Data. Zhang L, Ma H,. High-...

liondb.atlas.bx.psu.edu liondb.atlas.bx.psu.edu

Maps of the Saccharomyces Genome — Genome Cartography v1.0.0 documentation

http://liondb.atlas.bx.psu.edu/project/saccharomyces.html

Nucleosome Maps of the Drosophila Genome. Enter search terms or a module, class or function name. SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near 1 Nucleosomes. Yen K, Vinayachandran V,. Cell (2013 Sep 12). Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature (2012 Jan 18). Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution. Cell (2011 Dec 9). Supplementary Data Raw Sequencing Data. Zhang L, Ma H,. High-...

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Genome Cartography — Genome Cartography v1.0.0 documentation

Enter search terms or a module, class or function name. The Penn State Genome Cartography Project. Is a collaboration between Penn State's Center for Eukaryotic Gene Regulation. And Center for Comparative Genomics and Bioinformatics. To map DNA sequence features, protein-nucleic acid interactions, and other information to the genomes of model organisms, and present that information in a visually cognitive way that provides a discovery pathway for biological knowledge. Maps of the Saccharomyces.

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