influenza.psych.ac.cn

Influenza Virus Database Home

IV Sequence Distribution Tool. IV Sequence Quality Filter System. IV Protein Structure View. The current version of IVDB data was updated on 2007-01-25. IVDB contains 43,875 influenza virus nucleotide sequences, 53,983 CDS sequences and 53,983 protein sequences. IVDB newly developed the IV Sequence Distribution Tool. Which facilitates IV global transmission and evolution analysis. Other Databases in BGI. A knowledgebase for silkworm biology and genomics. A knowledgebase for silkworm biology and genomics.

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Influenza Virus Database Home | influenza.psych.ac.cn Reviews

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IV Sequence Distribution Tool. IV Sequence Quality Filter System. IV Protein Structure View. The current version of IVDB data was updated on 2007-01-25. IVDB contains 43,875 influenza virus nucleotide sequences, 53,983 CDS sequences and 53,983 protein sequences. IVDB newly developed the IV Sequence Distribution Tool. Which facilitates IV global transmission and evolution analysis. Other Databases in BGI. A knowledgebase for silkworm biology and genomics. A knowledgebase for silkworm biology and genomics.

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1 iv type

2 c segment

3 any segment

4 host

5 any host

6 avian

7 camel

8 canine

9 envrionment

10 equine

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iv type,c segment,any segment,host,any host,avian,camel,canine,envrionment,equine,human,leopard,mink,mouse,seal,swine,tiger,whale,tools and analysis,sequence blast,multi alignment,phylogenetic tree builder,iv sequence polymorphism,what's new,bgi ris

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Influenza Virus Database Home | influenza.psych.ac.cn Reviews

https://influenza.psych.ac.cn

IV Sequence Distribution Tool. IV Sequence Quality Filter System. IV Protein Structure View. The current version of IVDB data was updated on 2007-01-25. IVDB contains 43,875 influenza virus nucleotide sequences, 53,983 CDS sequences and 53,983 protein sequences. IVDB newly developed the IV Sequence Distribution Tool. Which facilitates IV global transmission and evolution analysis. Other Databases in BGI. A knowledgebase for silkworm biology and genomics. A knowledgebase for silkworm biology and genomics.

INTERNAL PAGES

influenza.psych.ac.cn

1

IVDB Sequence Polymorphism

http://influenza.psych.ac.cn/tools/sp/spOption.jsp;jsessionid=442624D586589B5D68330459D78B1E3D

For sequence polymorphism analysis Help. IVDB provides pre-computed polymorphisms in IV genes and proteins, which are grouped by host, subtype and segment. Users are able to search sequence polymorphisms by host, subtype, and segment. The pre-made alignments, phylogenetic trees, and geographical distributions in a world map are also available for instant access. The distribution of each amino acid on each polymorphic site is shown in tabular list. Download the alignment result file.

2

Influenza Virus Database Home

http://influenza.psych.ac.cn/index.jsp;jsessionid=442624D586589B5D68330459D78B1E3D

IV Sequence Distribution Tool. IV Sequence Quality Filter System. IV Protein Structure View. The current version of IVDB data was updated on 2007-01-25. IVDB contains 43,875 influenza virus nucleotide sequences, 53,983 CDS sequences and 53,983 protein sequences. IVDB newly developed the IV Sequence Distribution Tool. Which facilitates IV global transmission and evolution analysis. Other Databases in BGI. A knowledgebase for silkworm biology and genomics. A knowledgebase for silkworm biology and genomics.

3

IVDB Help

http://influenza.psych.ac.cn/help/Help.jsp;jsessionid=442624D586589B5D68330459D78B1E3D

4

IVDB Multi-Alignment

http://influenza.psych.ac.cn/tools/clustalw/alignment_option.jsp;jsessionid=442624D586589B5D68330459D78B1E3D

Multiple sequence alignment and visual software Help. Input of alignment sequence. The data in your WorkSet. Fa, fas, .fasta]. Use FAST algorithm for the alignment guide tree. Protein alignment with negative values in matrix. Fast Pairwise settings:* *. Number of best diags. Window around best diags. Slow Pairwise settings:* *. File for new guide tree. File for old guide tree. No end gap separation pen. Gap separation pen. range. IVDB is supported by institutional grant from Beijing Institute of Genomics.

5

IVDB Statistics

http://influenza.psych.ac.cn/statics/Statics.jsp

Statistic information about IVDB. IVDB total data records:. Nucleotide sequence: 43,875. CDS sequence: 53,983. Protein sequence: 53,983. Data distribution and statistics of different sources. Data distribution and statistics of different types of influenza virus. Data distribution and statistics of different subtypes of influenza A virus. Data distribution and statistics of different segments. Data distribution and statistics of different years. Data distribution and statistics of different hosts.

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biodb.sgst.cn

SDSPB-组学数据资源

http://biodb.sgst.cn/main/cn/omicsDataResources.jsp

基因组勘测序列 Genome Survey Sequences，GSS 是基因组DNA克隆的一次性部分测序得到的序列。序列标签位点 Sequence Tagged Sites 是基因组序列标记位点，其主要来源有随机位点序列、表达基因序列、遗产标记序列等。随着测序技术的发展，新的测序仪器开始投入使用，其产生的数据也和以往不同，测出的单条序列较短，为此我们将其称为小片段序列集 Short Read Archive。 Http:/ lifecenter.sgst.cn/gb2/. Virtual Chinese Genome Database is a dynamic genome database of Chinese population.VCGDB is a big data solution based on public data released by 1000 Genomes Project. Http:/ lifecenter.sgst.cn/ipride/. Http:/ lifecenter.sgst.cn/para/. Query interface for microRNA - g...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/GINGER1

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Gypsy-Integrase-Related Type 1 ( GINGER1. Is a recently described pool of exon-intron transposons ( Bao et al. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINGER1. Cysteine protease domain, or an Ulp1. Element...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Retroviridae

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and viral taxonomy:. Vertebrate retroviruses ( Retroviridae. Originally received attention when infectious representatives were characterized in humans. However, it is now known that any LTR retrotransposon capable of recruiting a third ORF envelope gene ( env. Is potentially capable of becoming a retrovirus ( env.

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/GINA

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Is a recently described pool of exon-intron transposons ( Marin 2010. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINA. Cysteine protease domain, or an Ulp1. Protease catalytic domain ( Marin 2010. Elements ar...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/GINNY

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Is a recently described pool of exon-intron transposons ( Marin 2010. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINNY. Cysteine protease domain, or an Ulp1. Protease catalytic domain ( Marin 2010. Elements a...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Bel/Pao

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and in-progress taxonomy:. LTR retroelements ( Malik et al. Constitute a family of LTR retrotransposons and retroviruses described to date only in metazoan genomes ( Copeland et al. This family was originally characterized with the discovery of element sequences such as Pao. Davis and Judd 1995. And the various Cer.

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Retroelements

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Tyrosine recombinase (YR) retroelements. Retroelements (retrotransposons and retroviruses) can currently be divided into four systems or groups commonly known as the long terminal repeat (LTR) retroelements. Eickbush and Jamburuthugoda 2008. Genes, and env. Families (for more details, see LTR retroelements. On the basis of their molecul...

gydb.org

Gypsy Database 2.0

http://www.gydb.org/index.php/Ty3/Gypsy

GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and in-progress taxonomy:. Branch 2 (non-chromodomain retroviruses and LTR retrotransposons). Of particular interest is the common evolutionarily history between several Ty3/Gypsy. Retroviruses (see, Eickbush and Malik 2002. Upon this, it is now known that env. Like genes are not exclusive of Retroviridae. Species t...

gydb.uv.es

Gypsy Database 2.0

http://gydb.uv.es/index.php/LTR_retroelements

BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. And other non-autonomous retroelements evolved from LTR retroelements. We additionally consider caulimoviruses of plants within the system of autonomous LTR retroelements because of their common evolutionary relationship with them based on the gag-pol region. The internal region con...

gydb.uv.es

Gypsy Database 2.0

http://gydb.uv.es/index.php/Intro

BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. LTR retroelements, and clan AA of Aspartic Peptidases. GyDB 2.0 is an update based on the analysis of Ty3/Gypsy, Retroviridae, Ty1/Copia. LTR retroelements and the Caulimoviridae. Since the existence of mobile DNA was first suggested by McClintock ( McClintock 1948. That mediate the...

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influenza.psych.ac.cn

Influenza Virus Database Home

IV Sequence Distribution Tool. IV Sequence Quality Filter System. IV Protein Structure View. The current version of IVDB data was updated on 2007-01-25. IVDB contains 43,875 influenza virus nucleotide sequences, 53,983 CDS sequences and 53,983 protein sequences. IVDB newly developed the IV Sequence Distribution Tool. Which facilitates IV global transmission and evolution analysis. Other Databases in BGI. A knowledgebase for silkworm biology and genomics. A knowledgebase for silkworm biology and genomics.

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