intermine.legumefederation.org
LegumeMine: HomeIntegrated queryable database for Legume resources
http://intermine.legumefederation.org/
Integrated queryable database for Legume resources
http://intermine.legumefederation.org/
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LegumeMine: Home | intermine.legumefederation.org Reviews
https://intermine.legumefederation.org
Integrated queryable database for Legume resources
intermine.legumefederation.org
LegumeMine: Template queries page
http://intermine.legumefederation.org/legumemine/templates.do
A mine with data for several organisms from LIS and other sources. Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category. 1) {return filterWebSearchablesHandler(event, this, 'template', 'all templates');}" onKeyPress="return disableEnterKey(event);" disabled="true" value=" / Filter:. Enter a new List name:. You are not logged in. Log in. To mark items as favourites.
LegumeMine: Home
http://intermine.legumefederation.org/legumemine/api.do
A mine with data for several organisms from LIS and other sources. Search this mine. Enter names. Examples: Glyma.16G153700, Glyma.16G153700.1, BARC-007901-00205, Seed yield 15-5. This mine integrates data for multiple legume species, currently string bean. It is currently under development by LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) as well as exports from other sources (e.g. LIS, Soybase, Peanutbase). Contact Sam Hokin: shokin at ncgr dot org. Introns have been added.
LegumeMine: Data Categories
http://intermine.legumefederation.org/legumemine/dataCategories.do
A mine with data for several organisms from LIS and other sources. This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window. The Legume Federation is funded by the. InterMine is funded by the. And interoperation is funded by the. LegFed LegumeMine (various legumes). LIS BeanMine (string bean). LIS PeanutMine (several peanut species).
LegumeMine: Lists
http://intermine.legumefederation.org/legumemine/bag.do?subtab=upload
A mine with data for several organisms from LIS and other sources. Upload list of identifiers. Create a new list. Select the type of list to create and either enter in a list of identifiers or upload identifiers from a file. A search will be performed for all the identifiers in your list. Separate identifiers by a comma. Qualify any identifiers that contain whitespace with double quotes like so: "even skipped". Click to see an example). Or Upload identifiers from a .txt file. InterMine is funded by the.
LegumeMine: Home
http://intermine.legumefederation.org/legumemine/mymine.do
A mine with data for several organisms from LIS and other sources. Search this mine. Enter names. Examples: Glyma.16G153700, Glyma.16G153700.1, BARC-007901-00205, Seed yield 15-5. This mine integrates data for multiple legume species, currently string bean. It is currently under development by LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) as well as exports from other sources (e.g. LIS, Soybase, Peanutbase). Contact Sam Hokin: shokin at ncgr dot org. Introns have been added.
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BeanMine: Home
http://mines.legumeinfo.org/beanmine/begin.do
A mine with bean data from the LIS tripal.chado database. Search this mine. Enter names. Examples: Phvul.001G011500, Phvul.001G011500.1, Seed weight 3-2. Welcome to the LIS BeanMine! This mine integrates many types of data for string bean. It is currently under development by LIS/NCGR as a demo built solely from the LIS tripal.chado database. Contact Sam Hokin shokin at ncgr dot org. Check out the new Shared Motif Search analysis of this specially selected list of upstream gene flanking regions! InterMin...
PeanutMine: Home
http://mines.legumeinfo.org/peanutmine/begin.do
A mine with peanut data from LIS PeanutBase. Search this mine. Enter names. Examples: Aradu.000JC, Aradu.000JC.1, GM1069. Welcome to the LIS PeanutMine! This mine integrates many types of data for peanuts. It is currently under development by LIS/NCGR as a demo built from Peanutbase, via chado and GFF files. database. Contact Sam Hokin shokin at ncgr dot org. Check out the new Shared Motif Search analysis of this specially selected list of upstream gene flanking regions! Introns have been added.
SoyMine: Home
http://mines.legumeinfo.org/soymine/begin.do
A mine with soybean data from the LIS tripal.chado database and Soybase. Search this mine. Enter names. Examples: Glyma.16G153700, Glyma.16G153700.1, BARC-007901-00205, Seed yield 15-5. Welcome to the LIS Soymine! This mine integrates many types of data for soybean. It is currently under development by LIS/LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) and exports from Soybase (genetic data). Contact Sam Hokin shokin at ncgr dot org. Introns have been added. InterMine 2002 ...
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intermine.legumefederation.org
LegumeMine: Home
A mine with data for several organisms from LIS and other sources. Search this mine. Enter names. Examples: Glyma.16G153700, Glyma.16G153700.1, BARC-007901-00205, Seed yield 15-5. This mine integrates data for multiple legume species, currently string bean. It is currently under development by LegFed/NCGR as a demo built from the LIS tripal.chado database (genomic data) as well as exports from other sources (e.g. LIS, Soybase, Peanutbase). Contact Sam Hokin: shokin at ncgr dot org. Introns have been added.
modMine: Home
A data warehouse for the modENCODE project. Project aims to identify all sequence-based functional elements in the C. elegans. Genomes. modENCODE labs submit data to the Data Coordination Center (DCC) where we organize and present the results. Is an integrated web resource of data and tools to browse. ModENCODE data and experimental details, download. Results and access the GBrowse genome browser. Explore some of the tools. Provided below and check out our quick start guide. If it helped your research!
InterMine
Which InterMine for my organism? Developer docs and getting started. Publications and citing us. Disparate data in, unified data out. InterMine integrates biological data sources, making it easy to query and analyse data. InterMine is open source. LGPL 2.1) and free to use. It's a software system that you can install on your own servers. To make data available on the web. There are many different InterMines worldwide, covering a broad range of model organisms and life science research areas.
InterMine documentation (latest) — InterMine documentation
Enter search terms or a module, class or function name. InterMine is an open source data warehouse build specifically for the integration and analysis of complex biological data. This guide in a PDF format. Tutorial - Configure your InterMine webapp! How to set up your InterMine environment on the Amazon Cloud. Using Class and Field Labels. Querying over genomic ranges. Guide to Customising your Web Application. Linking in to your mine. API and Client Libraries. InterMine JavaScript API Loader.
InterMine – Open source data warehouse system for the integration and analysis of biological data.
Open source data warehouse system for the integration and analysis of biological data. Follow Blog via Email. Enter your email address to follow this blog and receive notifications of new posts by email. Join 302 other followers. Where to find us. Systems Biology Centre,. Tennis Court Road,. CB2 1QR, UK. View intermineorg’s profile on Twitter. View intermine’s profile on GitHub. The annual InterMine office closure will be between 23. December evening until 3. See you all in 2017! Query name="employeeDepa...
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