philosophiaedoctor.blogspot.com
Philosophiæ Doctor: February 2007
http://philosophiaedoctor.blogspot.com/2007_02_01_archive.html
A blog to write stuff down that is happening during my PhD. Monday, February 05, 2007. Last week i finised a submission to ISMB in vienna in june. I managed to get it done in a week which was good for me. We titled it "A methodology for identifying methodologies from full text from literature". We wanted to keep it to a description of how we did what we did, some of the many! The best bit about the whole article is the final figure. Some very cool results from the classifier. It doesn't actually fare any...
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: April 2008
http://philosophiaedoctor.blogspot.com/2008_04_01_archive.html
A blog to write stuff down that is happening during my PhD. Thursday, April 10, 2008. Limits the search to Java code only, same works for many other languages see here. Recently I wanted to look at some good examples of SwingWorker. I searched for " extends SwingWorker lang:java. Language as a complex phenotype. An essay by Mark Pagel in Nature. Other things I have read recently should by on the sidebar of this blog or you can look at them here. I also believe intergenic DNA has physical importance in re...
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: Finishing off
http://philosophiaedoctor.blogspot.com/2007/06/finishing-off.html
A blog to write stuff down that is happening during my PhD. Thursday, June 07, 2007. In order to provide a good quality error assessment of the classifiers abilities. I've retrained it on 10,000 BMC sections and used this to classify 10,000 PMC sections. These two section sets should be mutually exclusive. However i'm not sure they are, because PMC distributes BMC content. I'll have to look in to this overlap. Anyway here is the result. Sect Corr Incor Precis Recall F-Measure. My MSc Research Project Blog.
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: May 2008
http://philosophiaedoctor.blogspot.com/2008_05_01_archive.html
A blog to write stuff down that is happening during my PhD. Thursday, May 01, 2008. Using names of methods and techniques as a way to make your work 'fit in'. Consider these two recently published article titles. GAPscreener: An Automatic Tool for Screening Human Genetic Association Literature in PubMed Using the Support Vector Machine Technique". Extraction of semantic biomedical relations from text using conditional random fields". But I do have a problem with the way that this title. My MSc Research P...
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: April 2007
http://philosophiaedoctor.blogspot.com/2007_04_01_archive.html
A blog to write stuff down that is happening during my PhD. Friday, April 13, 2007. Final mistakes and their corrections. I found out I was multiplying the class prior (the prob of finding that class given any document) by every token probability. This is not correct it should be:. Let ci = class prior prob for class i. Let ti = token prior prob for token i. P = ci t1 t2 t3. tn. Instead i was doing. P = (ci t1) (ci t2) (ci t3). (ci tn). Latest results are really good. The best yet (from 10,000 sections).
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: clippings on the subject of best practice
http://philosophiaedoctor.blogspot.com/2007/08/clippings-on-subject-of-best-practice.html
A blog to write stuff down that is happening during my PhD. Thursday, August 02, 2007. Clippings on the subject of best practice. From: Commission for Rural Communities. URL: http:/ www.ruralcommunities.gov.uk/files/CRC18-DefiningBestPractice.pdf. What is best practice? The identification, collection and dissemination of best. Practice is a commonly used approach to improving practice. However in order to identify best practice we first need to. Identify and agree the key components that make it up.
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: December 2008
http://philosophiaedoctor.blogspot.com/2008_12_01_archive.html
A blog to write stuff down that is happening during my PhD. Thursday, December 11, 2008. I have created a Google Docs presentation. Biological basics for non-biologists. Its aimed at people who work with biological information a lot of the time. But who don't have any formal training in biology and want to be able to . Understand what they're working with a little better. Subscribe to: Posts (Atom). Try out Google Docs new Form/Spreadsheet function. Google Reader shared items page.
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: A google web toolkit webapp to test out my web services (TextServices)
http://philosophiaedoctor.blogspot.com/2007/06/google-web-toolkit-webapp-to-test-out.html
A blog to write stuff down that is happening during my PhD. Thursday, June 07, 2007. A google web toolkit webapp to test out my web services (TextServices). I have created a web application and set of 3 WSDL/SOAP web services. The webapp allows you to try out each of the services. The three services currently available are. I tried these out on the classifier:. This paper is not only destined to become seminal but is also highly original". Classified as a section of type: INTRODUCTION. Our findings are w...
philosophiaedoctor.blogspot.com
Philosophiæ Doctor: July 2007
http://philosophiaedoctor.blogspot.com/2007_07_01_archive.html
A blog to write stuff down that is happening during my PhD. Sunday, July 01, 2007. Services Available to test. The three text web services and the testing webpage are now available at. Http:/ 130.88.90.134:8080/TextServices/. This page has a link to the extraordinarily simple userguide, links to the 3 wsdl documents for the web services and links to 3 taverna workflows that you can use to invoke the services. I use the commons-codec. For this. It is very simple to use. Subscribe to: Posts (Atom).
