keatslab.org keatslab.org

keatslab.org

Keats Lab

Public Portal to the Keats Lab at the Translational Genomics Research Institute

http://www.keatslab.org/

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CONTACTS AT KEATSLAB.ORG

Jonathan Keats

9652 Ea●●●●●●●w Drive

Sco●●●ale , Arizona, 85260

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1.48●●●●0634
jo●●●●●●●●●●●●@gmail.com

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Jonathan Keats

9652 Ea●●●●●●●w Drive

Sco●●●ale , Arizona, 85260

US

1.48●●●●0634
jo●●●●●●●●●●●●@gmail.com

View this contact

Jonathan Keats

9652 Ea●●●●●●●w Drive

Sco●●●ale , Arizona, 85260

US

1.48●●●●0634
jo●●●●●●●●●●●●@gmail.com

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PAGE TITLE
Keats Lab | keatslab.org Reviews
<META>
DESCRIPTION
Public Portal to the Keats Lab at the Translational Genomics Research Institute
<META>
KEYWORDS
1 keats lab
2 search this site
3 blog
4 ampure and not so simple
5 computation
6 advanced awk/gawk
7 command line ftp
8 filecompression
9 ggplot
10 github
CONTENT
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keats lab,search this site,blog,ampure and not so simple,computation,advanced awk/gawk,command line ftp,filecompression,ggplot,github,myeloma tools,myeloma scripts,ngs tools,ngs scripts,python,biomart,thingsidoallthetime,unix basics,data repository,links
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Keats Lab | keatslab.org Reviews

https://keatslab.org

Public Portal to the Keats Lab at the Translational Genomics Research Institute

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keatslab.org keatslab.org
1

Python - Keats Lab

http://www.keatslab.org/computation/python

Affect of Heating Time on DNA Fragmentation. GATK - Fun - Confusion - Fear - Frustration - Things to Remember. Getting the Lab off the Ground. PCR Purification: AMPure and Simple. To TE or not to TE. What type of Dynabead do I need? UNIX Operators and Test Conditions. MM Cell Line Characterization. Cell Line Characterization Status. Time to get past shell scripting. In a terminal window launch the ipython notebook (opens a new tab in default web browser). IPython Notebook with transpose and pivot examples.

2

Configure A MAC - Keats Lab

http://www.keatslab.org/computation/configure-a-machine1

Affect of Heating Time on DNA Fragmentation. GATK - Fun - Confusion - Fear - Frustration - Things to Remember. Getting the Lab off the Ground. PCR Purification: AMPure and Simple. To TE or not to TE. What type of Dynabead do I need? UNIX Operators and Test Conditions. MM Cell Line Characterization. Cell Line Characterization Status. Build Mac OS X 10.9.5 computer (Nov 2014). Make a Local Directory and Binary Directory. Open a new terminal window, this ensures the current directory is your $HOME directory.

3

Vim - Keats Lab

http://www.keatslab.org/computation/vim

Affect of Heating Time on DNA Fragmentation. GATK - Fun - Confusion - Fear - Frustration - Things to Remember. Getting the Lab off the Ground. PCR Purification: AMPure and Simple. To TE or not to TE. What type of Dynabead do I need? UNIX Operators and Test Conditions. MM Cell Line Characterization. Cell Line Characterization Status. To Open or Create a new file. Vim Test file.txt. When the file opens you will be in the "Command Mode". Vim has two modes "Command" and "Insert". To enter Insert Mode. Move t...

4

Unix Basics - Keats Lab

http://www.keatslab.org/computation/unixbasics

Affect of Heating Time on DNA Fragmentation. GATK - Fun - Confusion - Fear - Frustration - Things to Remember. Getting the Lab off the Ground. PCR Purification: AMPure and Simple. To TE or not to TE. What type of Dynabead do I need? UNIX Operators and Test Conditions. MM Cell Line Characterization. Cell Line Characterization Status. Characters with Special Meaning. Wildcard of any size. Wildcard of only 1 character. A single period can be used to represent the current directory. Manual for list command.

5

Myeloma Tools - Keats Lab

http://www.keatslab.org/computation/myeloma-tools

Affect of Heating Time on DNA Fragmentation. GATK - Fun - Confusion - Fear - Frustration - Things to Remember. Getting the Lab off the Ground. PCR Purification: AMPure and Simple. To TE or not to TE. What type of Dynabead do I need? UNIX Operators and Test Conditions. MM Cell Line Characterization. Cell Line Characterization Status. Future Improvements: Automate index calculations in script skipping the requirement for the database. Included the SAM/PAM UAMS classifier in the pipeline.

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Affect of Heating Time on DNA Fragmentation. DNA Copy Number and its Effects on Log2 Values and Allelic Ratios at Different Tumor Purities. GATK - Fun - Confusion - Fear - Frustration - Things to Remember. Getting the Lab off the Ground. PCR Purification: AMPure and Simple. To TE or not to TE. What type of Dynabead do I need? Build A MAC (Mavericks - OS X 10.9.5). Build a MAC (Sierra - macOS 10.12.2). UNIX Operators and Test Conditions. MM Cell Line Characterization. Cell Line Characterization Status.

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